include export functions to foreach in runAnalysis

dyohanne · Aug 13, 2018 · 972f79a · 972f79a
1 parent 9a3a126
commit 972f79a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/RepDaAnalysisFns.R b/R/RepDaAnalysisFns.R
@@ -663,8 +663,8 @@ CountkmerFrequency <- function(seqs,type="NT",k=4){
 getKmerFrequency <- function(seqs,type="NT",k=4,normForLength=F){
 
  if(type=="NT"){
- seqSet <- DNAStringSet(seqs) 
- seq_mers <- oligonucleotideFrequency(seqSet,width=k,as.prob=F)
+ seqSet <- Biostrings::DNAStringSet(seqs) 
+ seq_mers <- Biostrings::oligonucleotideFrequency(seqSet,width=k,as.prob=F)
  rownames(seq_mers) <- seqs 
 
  }else{