GEnomic Integrated suitE
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
sh Miniconda3-latest-Linux-x86_64.sh
Just accept the defaults
after installing miniconda,
open a new window and type conda --version and see if you have version > 4.0
then install genie by downloading the installer script
wget https://raw.githubusercontent.com/drveera/genie/master/library/ipsych_installer.sh
sh ipsych_installer.sh
open a new window and type
source activate genie
and you'll be good to go. Type genie -h and you'll see help message like this.
genie
usage:
genie <command> [<args>...]
The following commands are available:
COMMAND DESCRIPTION
gwas run gwas
geneset run gene/geneset analysis using gwas summary file
rohs run analysis of runs of homozygosity
prs run polygenic risk score analysis
gcta run GCTA analyses
See 'genie <command> --help' for more information on a specific command.
For example, type 'genie geneset --help'