Using TCR and expression for sequence embedding

This repository contains resources in the form of ebooks, which are related to Data Science, Machine Learning, and similar topics.

Information Theoretic Framework for Paired Single Cell Gene Expression and TCR Sequencing

Near-optimal RNA-Seq quantification

Template for stlite single-page app

A Nextflow pipeline for single-cell RNA-Seq dataset

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

A centralized repository for Nextflow modules across the BTC community

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

Digenome-toolkit ver2.

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

published papers with a lot of data

scRNAseq analysis notes from Ming Tang

T/B cell receptor sequencing analysis notes

Python GUIs for Humans! PySimpleGUI is the top-rated Python application development environment. Launched in 2018 and actively developed, maintained, and supported in 2024. Transforms tkinter, Qt, …

🦠 A tool for identifying and analyzing functions in microbial genomes.

Simple succinct data structures (in Rust)

Building a portfolio website from scratch to showcase my data science projects

Single cell analysis in the browser

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, Beta-Secratese 1

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

A package for parsing gff3 (general feature format) files into pandas dataframes

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly