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Commits on Feb 14, 2024

• fixed CSIDE bug and prepare vignettes for package build

  dmcable

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Commits on Dec 13, 2023

• fixed medv issue and region checking

  dmcable

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  1b12bd3
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Commits on Nov 24, 2023

• updated manual, added warning, and added source for vignette 4

  dmcable

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  15f29e9
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Commits on Jun 6, 2023

• Merge branch 'master' of https://github.com/dmcable/spacexr into update

  dmcable

  committed
  5baf639
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• minor changes to Vignettes

  dmcable

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• Update CSIDE.R (replace doublet_mode with RCTDmode

  dmcable

  authored
  ce44e1f
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• Update spacexr.R (replace doublet_mode with RCTDmode in config)

  dmcable

  authored
  71d3d08
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Commits on Apr 25, 2023

• fix critical error: Q_mat -> SQ_mat

  dmcable

  authored
  696de15
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Commits on Mar 15, 2023

• Adding a utility function to subset RCTD/spacexr object based on spatial barcodes

  simoncmo

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  b1f154f
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Commits on Feb 22, 2023

• Merge branch 'master' of https://github.com/dmcable/spacexr into update

  dmcable

  committed
  c8bc65f
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• add answer to faq and installation timeout

  dmcable

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Commits on Feb 7, 2023

• Update runRCTD.R

  dmcable

  authored
  90b6612
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Commits on Feb 3, 2023

• update merge_RCTD_objects

  dmcable

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  2c09d21
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Commits on Feb 2, 2023

• v2.2.0: meta regression across samples

  dmcable

  committed
  205c9ac
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Commits on Jan 26, 2023

• Update CSIDE_utils.R

  dmcable

  authored
  52591d8
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Commits on Jan 9, 2023

• fix cell_type_info bug in run.CSIDE.general

  dmcable

  authored
  9461a8d
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Commits on Jan 2, 2023

• choose_cell_types: detect error in insufficient counts

  dmcable

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  00fc7a1
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Commits on Dec 17, 2022

• CSIDE length cell_types typo

  dmcable

  committed
  b4f3c77
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• CSIDE population inference handle case where cell types are not present across all samples

  dmcable

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  66e4902
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• fix SQ_mat parallel error

  dmcable

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  73e07af
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Commits on Dec 16, 2022

• C-SIDE one cell type case functionality

  dmcable

  committed
  b2c17cf
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• fix calc_Q_k error

  dmcable

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  39c46aa
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Commits on Dec 14, 2022

• fix typo sigma_init in CSIDE

  dmcable

  committed
  fdbc537
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• fix parallel bug RCTD SQ_mat

  dmcable

  committed
  ca299f0
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• parallel compatibility and Rfast dependency

  dmcable

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  c309165
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• update documentation of Reference

  dmcable

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  e8603fa
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• fix RCTD load Q_mat bug

  dmcable

  committed
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Commits on Dec 13, 2022

• major update: change Q_mat interpolation from linear to cubic spline for improved numerical performance and speed. Several other substantial speed improvements to C-SIDE

  dmcable

  committed
  5b7da3d
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Commits on Dec 8, 2022

• improved C-SIDE code for speed improvements and convergence

  dmcable

  committed
  3341aaa
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Commits on Nov 28, 2022

• CSIDE exvar : added mean and sd of each region

  dmcable

  committed
  1e0747a
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Commits on Nov 25, 2022

• CSIDE-categorical add in sd

  dmcable

  committed
  d6981b6
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Commits on Nov 24, 2022

• fix categorical bug in all_gene_list

  dmcable

  committed
  47d79d0
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Commits on Nov 23, 2022

• modify CSIDE.regions and associated vignette

  dmcable

  committed
  5f3b9eb
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• update documentation to explain categorical C-SIDE

  dmcable

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Commits on Nov 8, 2022

• check for NA values in counts rownames, colnames

  dmcable

  committed
  726db81
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