I am working with different omics datasets. Here, I am sharing some tools for the analysis of NGS, CyTOF and IMC data.
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NeuroSysMed
- Bergen
- https://www.uib.no/en/persons/Dimitrios.Kleftogiannis
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cfDNA_AnalysisPipeline
cfDNA_AnalysisPipeline PublicAnalysis of cfDNA data with UMIs (consensus generation, SNV calling, annotation and evaluation of fragment length profiles)
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singleCellClassification
singleCellClassification PublicSingle cell classification and feature engineering using DREMI scores
R 4
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duplexFiltering
duplexFiltering Publicduplex DNA molecule identification tool for ultra-sensitive SNV detection
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AmpliSolve
AmpliSolve PublicIdentification of single nucleotide variants using position-specific error estimation in deep sequencing data
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IMC_DataAnalysis
IMC_DataAnalysis PublicSimple workflow for IMC data exploration, annotation and visualisation of single-cells
R 1
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NerveHostspotDetector
NerveHostspotDetector PublicProcess IMC data at the pixel level and detect hotspots.
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