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ImageJ macros for various image processing and detector characterization tasks. If you have questions or suggestions, please contact Direct Electron (https://www.directelectron.com).
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directelectron/imagej-macros
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Install the Radial Profile plugin before running these macros. This plugin is available at: https://imagej.nih.gov/ij/plugins/radial-profile.html If you have trouble running any of these macros, first try updating ImageJ/Fiji. Some of the functions used in the macros are only available in newer versions. If you have questions or suggestions for improvements, please email: [email protected] Benjamin Bammes, PhD Director of Research & Development Direct Electron To have ImageJ/Fiji load these macros into the Plugins/Macros menu automatically at startup, copy all macros into the Fiji.app\macros folder and then paste the following code in the Fiji.app\macros\StartupMacros.fiji.ijm file: // Start: Direct Electron section // Add this section before the "About Startup Macros..." line // in StartupMacros.fiji.ijm macro "About Direct Electron Macros..." { title = "About Direct Electron Macros"; text1 = "Direct Electron (directelectron.com) is the technology leader\n" + "in direct detection cameras for electron microscopy and other\n" + "high-performance scientific cameras."; text2 = "These macros are provided to assist with common image\n" + "processing, camera characterization, and calibration tasks in\n" + "ImageJ. These macros are freely available for anyone interested\n" + "(regardless of whether they use Direct Electron's cameras)."; text3 = "If you have suggestions or make any changes to these macros,\n" + "we kindly ask that you share them with us for the benefit of\n" + "the broader scientific community."; text4 = "Updates to these macros are available on Direct Electron's\n" + "GitHub page (https://github.com/directelectron/imagej-macros)."; Dialog.createNonBlocking(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.addMessage(text3); Dialog.addMessage(text4); Dialog.show(); } macro "Coincidence Loss Calculator..." { if (File.exists("DE_CoincLoss.ijm")) { runMacro("DE_CoincLoss.ijm"); } else { title = "Macro Not Found"; text1 = "DE_CoincLoss.ijm was not found in the macro folder."; text2 = "Download the macro from Direct Electron's GitHub page\n" + "(https://github.com/directelectron/imagej-macros)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "DQE Curve Calculator..." { if (File.exists("DE_DQECurve.ijm")) { runMacro("DE_DQECurve.ijm"); } else { title = "Macro Not Found"; text1 = "DE_DQECurve.ijm was not found in the macro folder."; text2 = "Download the macro from Direct Electron's GitHub page\n" + "(https://github.com/directelectron/imagej-macros)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "DQE0 Calculator..." { if (File.exists("DE_DQE0.ijm")) { runMacro("DE_DQE0.ijm"); } else { title = "Macro Not Found"; text1 = "DE_DQE0.ijm was not found in the macro folder."; text2 = "Download the macro from Direct Electron's GitHub page\n" + "(https://github.com/directelectron/imagej-macros)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "False Positives Calculator..." { if (File.exists("DE_FalsePos.ijm")) { runMacro("DE_FalsePos.ijm"); } else { title = "Macro Not Found"; text1 = "DE_FalsePos.ijm was not found in the macro folder."; text2 = "Download the macro from Direct Electron's GitHub page\n" + "(https://github.com/directelectron/imagej-macros)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "Magnification Calibration..." { if (File.exists("DE_MagCal.ijm")) { runMacro("DE_MagCal.ijm"); } else { title = "Macro Not Found"; text1 = "DE_MagCal.ijm was not found in the macro folder."; text2 = "Download the macro from Direct Electron's GitHub page\n" + "(https://github.com/directelectron/imagej-macros)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "MTF Calculator (from ASI)..." { if (File.exists("ASI_MTF.ijm")) { runMacro("ASI_MTF.ijm"); } else { title = "Macro Not Found"; text1 = "ASI_MTF.ijm was not found in the macro folder."; text2 = "Download the macro from Erik Maddox's GitHub page\n" + "(https://github.com/emx77/ASI_MTF)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "NNPS Calculator..." { if (File.exists("DE_NNPS.ijm")) { runMacro("DE_NNPS.ijm"); } else { title = "Macro Not Found"; text1 = "DE_NNPS.ijm was not found in the macro folder."; text2 = "Download the macro from Direct Electron's GitHub page\n" + "(https://github.com/directelectron/imagej-macros)."; Dialog.create(title); Dialog.addMessage(text1); Dialog.addMessage(text2); Dialog.show(); } } macro "-" {} //menu divider // End: Direct Electron section
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ImageJ macros for various image processing and detector characterization tasks. If you have questions or suggestions, please contact Direct Electron (https://www.directelectron.com).
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