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Processing data from DOAF, the Disease Ontology Annotation Framework

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Extracting disease–gene associations from DOAF

DOAF is a resource that extracts functional disease–gene associations from GeneRIF [ref]. We're using the resource in rephetio, our network for drug repurposing. This repository extracts associations for the diseases and genes in rephetio.

doaf.ipynb processes the DOAF downloads and outputs user-friendly TSVs to data.

License

Please contact the DOAF creators for the licensing of any DOAF content or derivatives. All original content in this repository is licensed under CC0 1.0.