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pyensembl Public
Forked from openvax/pyensemblPython interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Python Apache License 2.0 UpdatedDec 22, 2022 -
Hotspot_Analysis Public
Analysis scripts for writing the Hotspot paper
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scTransformPy Public
A Python implementation of of the scTransform method
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Snakemake_Tutorial Public
A short tutorial on getting started with Snakemake for workflow management
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scVI Public
Forked from scverse/scvi-toolsDeep generative modeling for single-cell transcriptomics
Jupyter Notebook MIT License UpdatedFeb 25, 2019 -
CDIPS_Tutorial_2017 Public
Tutorial on Data Manipulation in Python
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scikit-learn Public
Forked from scikit-learn/scikit-learnscikit-learn: machine learning in Python
Python Other UpdatedJun 1, 2017 -
berkeley Public
Forked from thehackerwithin/berkeleyThe Hacker Within at the University of California - Berkeley
Jupyter Notebook UpdatedApr 18, 2017 -
THW_Python_Plotting Public
Tutorial on plotting in Python
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seaborn Public
Forked from mwaskom/seabornStatistical data visualization using matplotlib
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 21, 2017 -
sphinx-template Public
Forked from docathon/sphinx-templateA template for a fully-functioning sphinx deployment
Python MIT License UpdatedMar 8, 2017 -
RSEM Public
Forked from deweylab/RSEMRSEM: accurate quantification of gene and isoform expression from RNA-Seq data
C++ GNU General Public License v3.0 UpdatedFeb 8, 2017 -
group-meeting Public
Forked from academicpages/group-meetingA Jekyll template (based on holman/left) for a group that has regularly scheduled meetings, one post per date. Genericized from thehackerwithin/template
CSS MIT License UpdatedSep 27, 2016 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellList of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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goatools Public
Forked from tanghaibao/goatoolsPython scripts to find enrichment of GO terms
Python BSD 2-Clause "Simplified" License UpdatedMay 19, 2016 -
Miniconda-Install Public
Install Python packages as stand-alone applications using Miniconda
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vim-ipython Public
Forked from ivanov/vim-ipythonA two-way integration between Vim and IPython 0.11+
Python UpdatedJan 14, 2016 -
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google-scholar-scraper Public
Forked from adeel/google-scholar-scraperPython library for scraping Google Scholar
Python UpdatedJan 16, 2015 -
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