Stars
Some files used by the "MPI/multi-threaded software in eHive/LSF" session during the Ensembl retreat 2018
create, manage, and upload track hubs for use in the UCSC genome browser
Pipeline that creates plant track hubs on a server (ftp:https://ftp.ensemblgenomes.org/pub/misc_data/Track_Hubs/) using Array Express and ENA APIs and then registers the track hubs into the Track Hub Reg…
Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
An R package to use the Breeding API (BrAPI) for accessing plant breeding data.
A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)
Automatically exported from code.google.com/p/cdhit
Pipeline that creates plant track hubs on a server (ftp:https://ftp.ensemblgenomes.org/pub/misc_data/Track_Hubs/) using Array Express and ENA APIs and then registers the track hubs into the Track Hub Reg…
The Ensembl Variation Perl API and SQL schema
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
modules required to set up EG Plants mirror
Tools (written in C using htslib) for manipulating next-generation sequencing data
Auxillary API for accessing Ensembl Genomes databases using the Ensembl Perl API
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
Ensembl / treebest
Forked from lh3/treebestTreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
A collection of tools which Ensembl uses to work with Git
A eHive Pipeline for loading Ensembl and Ensembl Genomes databases to a MySQL compatible server
MySQL comes with a huge number of very useful scripts however there are situations where the toolset is no adequate. This package attempts to fill that gap. The project is called naga because it is…
The Ensembl Compara Perl API and SQL schema