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dbespiatykh/README.md

Hi there 👋🏻

I'm a bioinformatician working in the field of microbial genomics. Specifically, my research focuses on challenges in genomics, phylogenomics, and transcriptomics of infectious organisms such as Mycobacterium tuberculosis, Staphylococcus aureus, and Klebsiella pneumoniae.

RG ORCiD GitHub

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  1. TB-gen TB-gen Public

    Web-app to explore Mycobacterium tuberculosis complex

    Python 1 1

  2. RDscan RDscan Public

    A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples

    Python 4 1

  3. TBvar TBvar Public

    Variant detection and lineage barcoding of Mycobacterium tuberculosis

    Python

  4. tblg tblg Public

    A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file

    Python 1