CompleX Group Interactions (XGI) is a Python package for higher-order networks.

Fast, flexible and easy to use probabilistic modelling in Python.

Co-accessibility network from ATAC-seq data. Python code, based on Cicero package (R).

Tool for plotting sequencing data along genomic coordinates.

Implementation for MatMul-free LM.

STUMPY is a powerful and scalable Python library for modern time series analysis

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Kolmogorov Arnold Networks

HGX is a multi-purpose, open-source Python library for higher-order network analysis

Formalizing and benchmarking open problems in single-cell genomics

🔬 Path to a free self-taught education in Bioinformatics!

Haplotype-aware CNV analysis from single-cell RNA-seq

Efficient genotyping bi-allelic SNPs on single cells

Elenco quotidiano dei risultati ASN

Python implementation of Milo for differential abundance testing on KNN graph

rcongas

A set of Pyro models and functions to infer CNA from scRNA-seq data

Python implementations for Sparse CCA

materials for learing various stuff by doing them myself

Fast streams for block gzip files.

Laplacian Renormalization Group for heterogeneous networks

A high-performance, zero-overhead, extensible Python compiler using LLVM

An interface for Nested Stochastic Block Model for single cell analysis

cfDNA analysis workflow

Python package for detecting core-periphery structure in networks.

Module to detect mesoscale structures (community, core-periphery, bipartite) on Graphs and Multigraphs using surprise.

Multi-level network clustering based on the Map Equation