protein_mpnn_utils.py cleanup #20
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added 4 commits
September 14, 2022 14:17
atoms shouldn't have a list as a default arg, since it's mutable and could cause problems. also added type annotations
- use string instead of manually defining alphabet - remove unused loop - use isinstance instead of type() - rename my_dict -> pdb_dict - remove unused variables - use f-string instead of str concat - use join instead of iterative string concat - add type annotation
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Cleanup a few issues detected by
pylintand refactoredparse_PDBto be more succinct. This MR does increase the requirements to Python 3.10, but I can remove the type annotations if you want more version flexibility.I can also provide further refactorings, if desired, such as:
protein_mpnn_utils.pyto be imported in the helper scriptsprotein_mpnn_utils.pyintoutils.pyandmodels.pypylintwarnings, such as unused variables and imports