Geniml is a python package for building machine learning models of genomic interval data (BED files). It also includes ancillary functions to support other types of analyses of genomic interval data.

Documentation is hosted at https://docs.bedbase.org/geniml/.

Without specifying dependencies, the default dependencies will be installed, which DO NOT include machine learning (ML) or heavy processing libraries.

From pypi:

pip install geniml

or install the latest version from the GitHub repository:

pip install git+https://github.com/databio/geniml.git

From pypi:

pip install geniml[ml]

Run tests (from /tests) with pytest. Please read the contributor guide to contribute.