Code necessary to replicate experiments and analyses necessary for the paper: Automated Citation Searching in Systematic Review Production : A Simulation Study

Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferring the results reported in clinical trials from text.

files for systematic review automation project

Living database of randomized controlled trials (RCTs)

Automatic synthesis of RCTs

Open-source vector similarity search for Postgres

This data project has been used as a take-home assignment in the recruitment process for the data science positions at Aerofit.

Source Code for blog

SYNERGY - Open machine learning dataset on study selection in systematic reviews

Declarative statistical visualization library for Python

WhisperX: Automatic Speech Recognition with Word-level Timestamps (& Diarization)

Python-based API-Wrapper to access Scopus

Files and notebook to recreate the model etc from RIS files

An Open Source Web Application for Automated Citation Seraching via OpenAlex and/or Semantic Scholar

State-of-the-Art Text Embeddings

IEBH-SRA tool to convert between different medical database search formats

Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.