move strand specification to FeatureLocation

daler · Feb 28, 2024 · 71033c1 · 71033c1
1 parent 955fb41
commit 71033c1
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/gffutils/biopython_integration.py b/gffutils/biopython_integration.py
@@ -46,10 +46,12 @@ def to_seqfeature(feature):
  return SeqFeature(
  # Convert from GFF 1-based to standard Python 0-based indexing used by
  # BioPython
- FeatureLocation(feature.start - 1, feature.stop),
+ FeatureLocation(
+ feature.start - 1,
+ feature.stop,
+ strand=_biopython_strand[feature.strand]),
  id=feature.id,
  type=feature.featuretype,
- strand=_biopython_strand[feature.strand],
  qualifiers=qualifiers,
  )