Code repository for functional screening of modulators of neural activity in living organisms

This code repository consists of the following:

MicroManager macro scripts (to run automated microscope routine):

• SCREEN_GUI.bsh
• SCREEN_RUN.bsh

ImageJ/FIJI/micromanager macros (for image processing):

• organizeWells.ijm
• neuronSelect.ijm
• neuronTrack.ijm

MATLAB scripts (for data analysis and visualization):

• analyzeNTdata.m
• visualizeNTdata.m