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@d3b-center

D3b

Center for Data Driven Discovery in Biomedicine at the Children's Hospital of Philadelphia

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  1. bixtools bixtools Public

    🐳 Dockerfiles for bioinformatics tools

    Dockerfile 14 4

  2. d3b-cli-igor d3b-cli-igor Public

    All-purpose CLI tool for D3b Center and partner orgs

    Python

Repositories

Showing 10 of 139 repositories
  • pLGG-immune-clinicoradiomics Public
    d3b-center/pLGG-immune-clinicoradiomics’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 16, 2024
  • terraform-aws-vpc Public

    A Terraform module to create anAmazon Web Services (AWS) Virtual Private Cloud (VPC).

    d3b-center/terraform-aws-vpc’s past year of commit activity
    HCL 0 0 0 1 Updated Oct 16, 2024
  • peds-brain-seg-pipeline-public Public

    Preprocessing and automatic tumor segmentation for pediatric brain tumor subjects

    d3b-center/peds-brain-seg-pipeline-public’s past year of commit activity
    2 0 0 1 Updated Oct 15, 2024
  • OpenPedCan-analysis Public Forked from AlexsLemonade/OpenPBTA-analysis

    The analysis repository for the Open Pediatric Cancer Project

    d3b-center/OpenPedCan-analysis’s past year of commit activity
    HTML 16 68 23 2 Updated Oct 15, 2024
  • d3b-dff-cli Public

    the command line tool code base for d3b data file foundation

    d3b-center/d3b-dff-cli’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Oct 15, 2024
  • AlleleCouNT Public

    Development repo for LOH

    d3b-center/AlleleCouNT’s past year of commit activity
    Python 1 Apache-2.0 0 1 0 Updated Oct 11, 2024
  • d3b_cbtn_summit Public
    d3b-center/d3b_cbtn_summit’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Oct 9, 2024
  • D3b-Pathogenicity-Preprocessing Public

    In collaboration with the Diskin lab, this repo houses a workflow designed to take in KF annotated vcf files, and further annotate for pathogenicity prediction

    d3b-center/D3b-Pathogenicity-Preprocessing’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 0 0 0 Updated Oct 8, 2024
  • fw-histoqc Public

    Flywheel gear that implements HistoQC package

    d3b-center/fw-histoqc’s past year of commit activity
    Python 0 0 0 0 Updated Oct 7, 2024
  • d3b-tiru-flywheel-code-repo Public

    Flywheel SDK example scripts

    d3b-center/d3b-tiru-flywheel-code-repo’s past year of commit activity
    Python 0 0 0 0 Updated Oct 6, 2024
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