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Starred repositories
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
Intel lab's open sourced data science framework for accelerating digital biology
QUILT: Low coverage whole genome sequence imputation with large reference panels
Microassembly based somatic variant caller for NGS data
Tools for working with genomic and high throughput sequencing data.
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
structural variant calling and genotyping with existing tools, but, smoothly.
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Scalable gVCF merging and joint variant calling for population sequencing projects
A curated list of awesome Bioinformatics libraries and software.
Share some useful guides and references about how to shift AI models to real world products or projects.
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
A lightweight and high-performance bioinformatics package in Golang
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
Jupyter widget to interactively view molecular structures and trajectories