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@csglab

Computational and Statistical Genomics Lab

The CSG lab is part of the Department of Human Genetics at McGill University, and is located at the McGill University and Génome Québec Innovation Centre.

Popular repositories Loading

  1. GEDI GEDI Public

    Gene Expression Decomposition and Integration

    HTML 15

  2. REMBRANDTS REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 13 11

  3. DiffRAC DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    R 8 1

  4. CRIES CRIES Public

    Counting Reads for Intronic and Exonic Segments

    R 7 1

  5. RCADE2 RCADE2 Public

    Recognition Code-Assisted Discovery of regulatory Elements v2

    C++ 5 1

  6. MPAQT MPAQT Public

    Shell 5

Repositories

Showing 10 of 21 repositories
  • GEDI Public

    Gene Expression Decomposition and Integration

    csglab/GEDI’s past year of commit activity
    HTML 15 BSD-2-Clause 0 0 0 Updated Aug 21, 2024
  • MPAQT Public
    csglab/MPAQT’s past year of commit activity
    Shell 5 MIT 0 0 0 Updated Aug 18, 2024
  • trex Public

    TRex: a computational method to associate changes in exon-centric splicing events with experimental variables form complex experimental designs

    csglab/trex’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Jul 10, 2024
  • trex_manuscript Public
    csglab/trex_manuscript’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jul 10, 2024
  • GEDI_manuscript Public

    This repository hosts R markdown notebooks reproducing the figures from the GEDI manuscript

    csglab/GEDI_manuscript’s past year of commit activity
    HTML 0 BSD-2-Clause 0 1 0 Updated May 17, 2024
  • DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    csglab/DiffRAC’s past year of commit activity
    R 8 GPL-3.0 1 0 0 Updated May 13, 2024
  • hgthesis_lms Public

    ALTERNATIVE SPLICING PROGRAMS IN TUMOR DEVELOPMENT AND PROGRESSION

    csglab/hgthesis_lms’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Feb 22, 2024
  • REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    csglab/REMBRANDTS’s past year of commit activity
    R 13 GPL-3.0 11 7 1 Updated Dec 16, 2023
  • JAMS Public

    Quantitative modeling of sequence, DNA accessibility, and methylation preferences of transcription factors using ChIP-seq data.

    csglab/JAMS’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Nov 1, 2023
  • PhantomPurgeR Public

    R package for the optimal purging of phantom molecules by the robust estimation of the sample index hopping rate in multiplexed droplet-based single-cell RNA-seq data

    csglab/PhantomPurgeR’s past year of commit activity
    R 3 BSD-2-Clause 1 0 0 Updated Jul 12, 2023
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