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multi-measure service capability (#453)
* multi-measure service, testing, and shared service utils * fix subject reference on MR * spotless edit * date rolled expired test case * additional coverage for measureService * Fix up some warnings, remove some dead code --------- Co-authored-by: Jonathan Percival <[email protected]>
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140
cqf-fhir-cr/src/main/java/org/opencds/cqf/fhir/cr/measure/r4/R4MultiMeasureService.java
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| package org.opencds.cqf.fhir.cr.measure.r4; | ||
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| import static org.opencds.cqf.fhir.cr.measure.r4.utils.R4MeasureServiceUtils.getFullUrl; | ||
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| import com.google.common.base.Strings; | ||
| import java.util.List; | ||
| import java.util.UUID; | ||
| import java.util.stream.Collectors; | ||
| import org.apache.commons.lang3.StringUtils; | ||
| import org.hl7.fhir.instance.model.api.IIdType; | ||
| import org.hl7.fhir.r4.model.Bundle; | ||
| import org.hl7.fhir.r4.model.Bundle.BundleType; | ||
| import org.hl7.fhir.r4.model.CanonicalType; | ||
| import org.hl7.fhir.r4.model.Endpoint; | ||
| import org.hl7.fhir.r4.model.IdType; | ||
| import org.hl7.fhir.r4.model.Measure; | ||
| import org.hl7.fhir.r4.model.MeasureReport; | ||
| import org.hl7.fhir.r4.model.Parameters; | ||
| import org.hl7.fhir.r4.model.Resource; | ||
| import org.opencds.cqf.fhir.api.Repository; | ||
| import org.opencds.cqf.fhir.cr.measure.CareGapsProperties; | ||
| import org.opencds.cqf.fhir.cr.measure.MeasureEvaluationOptions; | ||
| import org.opencds.cqf.fhir.cr.measure.common.MeasureEvalType; | ||
| import org.opencds.cqf.fhir.cr.measure.r4.utils.R4MeasureServiceUtils; | ||
| import org.opencds.cqf.fhir.utility.Ids; | ||
| import org.opencds.cqf.fhir.utility.builder.BundleBuilder; | ||
| import org.opencds.cqf.fhir.utility.monad.Either3; | ||
| import org.opencds.cqf.fhir.utility.repository.Repositories; | ||
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| // Alternate MeasureService call to Process MeasureEvaluation for the selected population of subjects against n-number | ||
| // of measure resources. The output of this operation would be a bundle of MeasureReports instead of MeasureReport. | ||
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| public class R4MultiMeasureService { | ||
| private static final org.slf4j.Logger log = org.slf4j.LoggerFactory.getLogger(R4MultiMeasureService.class); | ||
| private final Repository repository; | ||
| private final MeasureEvaluationOptions measureEvaluationOptions; | ||
| private final CareGapsProperties careGapsProperties; | ||
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| public R4MultiMeasureService( | ||
| Repository repository, | ||
| MeasureEvaluationOptions measureEvaluationOptions, | ||
| CareGapsProperties careGapsProperties) { | ||
| this.repository = repository; | ||
| this.measureEvaluationOptions = measureEvaluationOptions; | ||
| this.careGapsProperties = careGapsProperties; | ||
| } | ||
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| public Bundle evaluate( | ||
| List<Either3<CanonicalType, IdType, Measure>> measures, | ||
| String periodStart, | ||
| String periodEnd, | ||
| String reportType, | ||
| String subjectId, | ||
| Endpoint contentEndpoint, | ||
| Endpoint terminologyEndpoint, | ||
| Endpoint dataEndpoint, | ||
| Bundle additionalData, | ||
| Parameters parameters, | ||
| String productLine, | ||
| String practitioner) { | ||
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| var repo = Repositories.proxy(repository, true, dataEndpoint, contentEndpoint, terminologyEndpoint); | ||
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| var subjectProvider = new R4RepositorySubjectProvider(); | ||
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| var processor = new R4MeasureProcessor(repo, this.measureEvaluationOptions, subjectProvider); | ||
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| R4MeasureServiceUtils r4MeasureServiceUtils = new R4MeasureServiceUtils(repository); | ||
| r4MeasureServiceUtils.ensureSupplementalDataElementSearchParameter(); | ||
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| log.info("multi-evaluate-measure, measures to evaluate: {}", measures.size()); | ||
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| var evalType = MeasureEvalType.fromCode(reportType) | ||
| .orElse( | ||
| subjectId == null || subjectId.isEmpty() | ||
| ? MeasureEvalType.POPULATION | ||
| : MeasureEvalType.SUBJECT); | ||
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| // get subjects | ||
| var subjects = getSubjects(subjectProvider, practitioner, subjectId, evalType); | ||
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| // create bundle | ||
| Bundle bundle = new BundleBuilder<>(Bundle.class) | ||
| .withType(BundleType.SEARCHSET.toString()) | ||
| .build(); | ||
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| for (Either3<CanonicalType, IdType, Measure> measure : measures) { | ||
| MeasureReport measureReport; | ||
| // evaluate each measure | ||
| measureReport = processor.evaluateMeasure( | ||
| measure, periodStart, periodEnd, reportType, subjects, additionalData, parameters, evalType); | ||
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| // add ProductLine after report is generated | ||
| measureReport = r4MeasureServiceUtils.addProductLineExtension(measureReport, productLine); | ||
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| // add subject reference for non-individual reportTypes | ||
| measureReport = r4MeasureServiceUtils.addSubjectReference(measureReport, practitioner, subjectId); | ||
| // add id to measureReport | ||
| initializeReport(measureReport); | ||
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| // add report to bundle | ||
| bundle.addEntry(getBundleEntry(careGapsProperties.getMyFhirBaseUrl(), measureReport)); | ||
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| // progress feedback | ||
| var measureUrl = measureReport.getMeasure(); | ||
| if (!measureUrl.isEmpty()) { | ||
| log.info("MeasureReport complete for Measure: {}", measureUrl); | ||
| } | ||
| } | ||
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| return bundle; | ||
| } | ||
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| protected List<String> getSubjects( | ||
| R4RepositorySubjectProvider subjectProvider, | ||
| String practitioner, | ||
| String subjectId, | ||
| MeasureEvalType evalType) { | ||
| // check for practitioner parameter before subject | ||
| if (StringUtils.isNotBlank(practitioner)) { | ||
| if (!practitioner.contains("/")) { | ||
| practitioner = "Practitioner/".concat(practitioner); | ||
| } | ||
| subjectId = practitioner; | ||
| } | ||
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| return subjectProvider.getSubjects(repository, evalType, subjectId).collect(Collectors.toList()); | ||
| } | ||
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| protected void initializeReport(MeasureReport measureReport) { | ||
| if (Strings.isNullOrEmpty(measureReport.getId())) { | ||
| IIdType id = Ids.newId(MeasureReport.class, UUID.randomUUID().toString()); | ||
| measureReport.setId(id); | ||
| } | ||
| } | ||
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| protected Bundle.BundleEntryComponent getBundleEntry(String serverBase, Resource resource) { | ||
| return new Bundle.BundleEntryComponent().setResource(resource).setFullUrl(getFullUrl(serverBase, resource)); | ||
| } | ||
| } |
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