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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: beyondcell
Title: A Tool for the Analysis of Tumour Therapeutic Heterogeneity in
single-cell RNA-seq and Spatial Transcriptomics
Version: 2.2.1
Authors@R: c(
person("Maria Jose", "Jimenez-Santos", , "[email protected]", role = c("aut", "cre")),
person("Santiago", "Garcia-Martin", , "[email protected]", role = "aut"),
person("Coral", "Fustero-Torre", , "[email protected]", role = "aut"),
person("Lucas", "Friedman", , "[email protected]", role = "ctb"),
person("Gonzalo", "Gomez-Lopez", , "[email protected]", role = "ths"),
person("Fatima", "Al-Shahrour", , "[email protected]", role = "ths")
)
Description: Beyondcell computes a score summarizing the cell-based drug
sensitivity for each cell in your experiment and a subset of drugs of
interest. It also includes functions to prioritize drugs based on
these scores and visualize the results.
License: GPL-2
URL: https://github.com/cnio-bu/beyondcell,
https://bioinformatics.cnio.es/tools/
BugReports: https://github.com/cnio-bu/beyondcell/issues
Depends:
R (>= 4.0.0)
Imports:
cowplot (>= 1.1.1),
DMwR (>= 0.4.1),
dplyr (>= 1.0.9),
ggplot2 (>= 3.4.0),
ggrepel (>= 0.9.2),
patchwork (>= 1.1.2),
plyr (>= 1.8.8),
RColorBrewer (>= 1.1-3),
scales (>= 1.2.1),
see (>= 0.7.4),
Seurat (>= 4.3.0),
stringr (>= 1.5.0),
viridis (>= 0.6.2)
Suggests:
devtools (>= 2.4.5),
DropletUtils (>= 1.18.0),
hdf5r (>= 1.3.7),
Matrix (>= 1.5-3),
roxygen2 (>= 7.2.3),
testthat (>= 3.1.6),
usethis (>= 2.1.6)
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3