replace NF by exact field number for accessing p-values in circos_inp…

…ut_gen.sh
cmdoret · Aug 7, 2018 · 7d05947 · 7d05947
1 parent 64341b9
commit 7d05947
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/circos_conf/circos_input_gen.sh b/src/circos_conf/circos_input_gen.sh
@@ -52,7 +52,7 @@ tail -n +2 $tig |
 while read line
 do
  # is the p-value significant ?
- pval=$(echo $line | awk '{print $NF}' | sed 's/[eE]+\{0,1\}/*10^/g')
+ pval=$(echo $line | awk '{print $13}' | sed 's/[eE]+\{0,1\}/*10^/g')
  if (( $(echo "$pval > $sigpow" | bc -l) ))
  then
  awk -v chrom="$(cut -d$' ' -f2 <(echo $line))" \