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Update data availability in readme
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Cyril Matthey-Doret committed Apr 17, 2019
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Expand Up @@ -16,7 +16,7 @@ To run the pipeline with the data provided:
1. Download or clone this repository.
2. Download the data archive from zenodo at: [https://zenodo.org/record/1488603#.W-1V9KBReLw]
3. Uncompress the downloaded file using ```tar xzvf 20181115_csd_data.tar.gz data``` and the resulting `data` folder to the root of the repository.
3. Download the gzipped fastq files from BioProject [PRJNA505237](https://www.ncbi.nlm.nih.gov//bioproject/PRJNA505237), on SRA (not available yet).
3. Download the gzipped fastq files from BioProject [PRJNA505237](https://www.ncbi.nlm.nih.gov//bioproject/PRJNA505237), on SRA.
4. Move the RADseq files to `data/processed` and the WGS files to `data/wgs/raw/`.
5. Run the pipeline
1. On a cluster with LSF:
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