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| Home | ||
| Contents | ||
| ==== | ||
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| [](https://travis-ci.org/chungongyu/siga) | ||
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| * [Running SIGA](#running-siga) | ||
| * [Benchmarks](#benchmarks) | ||
| * [Citation](#citation) | ||
| * [Related Publications](#related-publications) | ||
| * [Publications](#publications) | ||
| * [FAQ](#faq) | ||
| * [Support](#support) | ||
| * [Authors](#authors) | ||
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| Overview | ||
| ======== | ||
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| SIGA is an open-source _de novo_ assembly toolkit containing various assembly pipelines which are totally compatible with [SGA](https://github.com/jts/sga) file format. Similar to [SGA](https://github.com/jts/sga), it is designed as a [modular set of programs](#running-siga), which are used to form an assembly pipeline. | ||
| SIGA is an open-source _de_ novo assembly toolkit containing various assembly pipelines which are totally compatible with [SGA](https://github.com/jts/sga) file format. Similar to [SGA](https://github.com/jts/sga), it is designed as a [modular set of programs](#running-siga), together which form an assembly pipeline. | ||
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| Quick Start | ||
| =========== | ||
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| * [rapidjson](https://github.com/Tencent/rapidjson) | ||
| * [gperftools](https://github.com/gperftools/gperftools) (optional but suggested) | ||
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| Dependencies may be installed using the package manager [Homebrew](https://homebrew.sh) on macOS and [Linxubrew](http:https://linuxbrew.sh) on Linux and Windows, using [Windows Subsystem for Linux](https://docs.microsoft.com/en-us/windows/wsl/). | ||
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| ### Compiling SIGA | ||
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| If you cloned the repository from github, run `autogen.sh` from the root directory | ||
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| Benchmarks | ||
| ======== | ||
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| Comming soon... | ||
| Comming soon ... | ||
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| Citation | ||
| ======== | ||
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| ## [SIGA](https://github.com/chungongyu/siga) | ||
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| Chungong Yu, Yu Lin, Guozheng Wei, Bing Wang, Yanbo Li and Dongbo Bu. **SIGA** : A Sensitive and Intelligent *de* novo Genome Assembler. | ||
| Chungong Yu, Yu Lin, Guozheng Wei, Bing Wang, Yanbo Li and Dongbo Bu. **SIGA** : An open-source Sensitive and Intelligent *de* novo Genome Assembler. | ||
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| Related Publications | ||
| ==================== | ||
| Publications | ||
| ============ | ||
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| None yet! ^_~ | ||
| None yet! ^_~ | ||
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| FAQ | ||
| ==== | ||
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| 1. **Where can I get further help or advice?** | ||
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| See [Support](#support) or the [siga wiki](https://github.com/chungongyu/siga/wiki). | ||
| See [Support](#support) or the [siga wiki](https://github.com/chungongyu/siga/wiki). | ||
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| 2. **What parameters should I tune to improve my assembly?** | ||
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| See [here](https://github.com/chungongyu/siga/wiki/SIGA-parameter-tuning) | ||
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| Support | ||
| ======= | ||
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| [Create a new issue](https://github.com/chungongyu/siga/issues) on GitHub. | ||
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| Contact [[email protected]](mailto:[email protected]) | ||
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| Authors | ||
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