This repository provides example code to convert/transfer MS-related data
between R and Python. Final goal is to develop an R package that allows to
efficiently integrate python packages for MS analysis with the Spectra
package. The SpectriPy package allows to use functionality of the matchms
Python packages directly in R and in addition exports also the low level
functions to convert between R Spectra objects and Python matchms Spectrum
objects that enable advanced users or developers to integrate additional Python
functionality into R via the reticulate R package.
- Carolin Huber
- Michael Witting
- Helge Hecht
- Johannes Rainer
SpectriPy uses basilisk to
ensure all required python packages are installed and available (in the correct
version) on each system. basilisk installs a self-contained conda environment,
thus, the SpectriPy package is independent of the system's Python environment.
To install the package use
BiocManager::install("RforMassSpectrometry/SpectriPy")