Visualization of spectral archive

Python framework for Deep Learning in Proteomics

Fundamentals public repo

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

Confidence Estimation for Mass Spectrometry Proteomics

Matthew The's implementation of MaRaCluster

A deep learning toolkit for mass spectrometry

DeepMRM: a targeted proteomics data interpretation tool

A Standardized Dataset-Based Algorithm for Efficient Variation Reduction in Large-Scale DIA MS Data.

Tools for treatment high res mass spectrum of natural organic matter samples

This is a R package for alignment of DIA mass-spec data

Dear-DIA is a spectrum-centric method that combines the deep variational autoencoder (VAE) with other machine learning algorithms, to detect the correspondence between precursors and fragments in D…

Quantitative mass spectrometry workflow.

A community dedicated to education of computer coding applied to mass spectrometry applications.

Software to convert multidimensional MS data from files in proprietary vendor formats to HDF5 format in the simple MZA data structure.

GLEAMS is a Learned Embedding for Annotating Mass Spectra.

A package to cluster and visualise MS/MS spectral data

Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity

Python tools and API to analyse MS/MS clustering results

A Python library for fast mass spectra clustering.

Post-processing peptide de novo sequences to improve their accuracy

Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.

mass spectrum ClusteRing Using locality Sensitive Hashing

The second version of the Kraken taxonomic sequence classification system