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73 Open 97 Closed
73 Open 97 Closed
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Issues list

Using the same architecture and training parameters in pytorch, the model fails to converge.
#201 opened Oct 31, 2024 by bioczsun
4
akita train error
#200 opened Jul 31, 2024 by guandailu
AssertionError, Basenji_test.py 'Conv1D' object has no attribute 'input_shape'
#199 opened Jun 5, 2024 by PouriaAzadehR
1
Question of expected data
#198 opened Jun 3, 2024 by seraphimangel77
1
basenji_read overflow
#196 opened May 20, 2024 by ElArquitectorgo
1
Question about the preprocessing script bam_cov.py
#195 opened May 15, 2024 by whui2bioinformatics
1
Problems during model training.
#192 opened Apr 6, 2024 by amingc3
7
Reproduce the Enformer's input sequences split
#190 opened Mar 5, 2024 by sararb
1
Issue with final matrix?
#188 opened Jan 11, 2024 by 16nbb1
When using Akita for single-cell prediction on the HCT116 cell line, the Pearson correlation coefficient is much lower.
#186 opened Nov 25, 2023 by 1944498970
8
How to convert the keras model to a basenji model
#180 opened Oct 9, 2023 by houruiyan
1
Stable environment configuration
#179 opened Sep 27, 2023 by tzhu-bio
1
handling blacklist\unmappable
#176 opened Aug 21, 2023 by yardenmatok203
1
Expose 'raw' as an argument?
#173 opened Aug 10, 2023 by Yaoyx
2
.hic
#172 opened Aug 6, 2023 by yardenmatok203
None in maps
#171 opened Jul 29, 2023 by yardenmatok203
4
Problem with calculating the target based on the gene sequence
#170 opened Jul 24, 2023 by wananal
1
No checkpoints found.
#169 opened Jul 19, 2023 by houruiyan
1
distiller
#168 opened Jul 8, 2023 by yardenmatok203
6
Weird targets
#167 opened Jul 1, 2023 by yardenmatok203
2
Output regions from Akita
#166 opened Jun 21, 2023 by ahmedabbas811
1
error with akita_data. py
#165 opened Jun 17, 2023 by yardenmatok203
3
Question about Gene Expression Training Preprocessing
#161 opened May 5, 2023 by wkl1990
3
akita can't train
#160 opened Apr 16, 2023 by bioczsun
1
Tensorflow records generated with basenji_data.py differ from original
#159 opened Apr 13, 2023 by icdh99
1
ProTip! What’s not been updated in a month: updated:<2024-10-04.