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Fix MUTATED events #1910

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Fix MUTATED events #1910

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@sbabyanusha sbabyanusha commented Sep 12, 2023 •
edited by Rima-Waleed
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Fix #1895
All the variants that are marked as MUTATED in the HGVSP_Short column are fixed.

Cancer studies updated in this pull request:

  1. acc_tcga_pan_can_atlas_2018
  2. angs_painter_2020
  3. bcc_unige_2016
  4. blca_bcan_hcrn_2022
  5. blca_msk_tcga_2020
  6. blca_tcga_pub_2017
  7. brain_cptac_2020
  8. brca_cptac_2020
  9. brca_igr_2015
  10. brca_mbcproject_2022
  11. brca_tcga_pub
  12. brca_tcga_pub2015
  13. cellline_ccle_broad
  14. cesc_tcga
  15. cesc_tcga_pan_can_atlas_2018
  16. coad_silu_2022
  17. coadread_mskresistance_2022
  18. coadread_tcga_pan_can_atlas_2018
  19. coadread_tcga_pub
  20. crc_apc_impact_2020
  21. crc_eo_2020
  22. cscc_ucsf_2021
  23. dlbc_tcga_pan_can_atlas_2018
  24. esca_tcga_pan_can_atlas_2018
  25. gbc_mskcc_2022
  26. gbm_mayo_pdx_sarkaria_2019
  27. hcc_inserm_fr_2015
  28. hcc_meric_2021
  29. hccihch_pku_2019
  30. histiocytosis_cobi_msk_2019
  31. kirc_tcga_pan_can_atlas_2018
  32. kirp_tcga_pan_can_atlas_2018
  33. lgg_tcga_pan_can_atlas_2018
  34. luad_broad
  35. luad_mskcc_2023_met_organotropism
  36. lusc_tcga_pub
  37. mbl_dkfz_2017
  38. mel_dfci_2019
  39. mel_ucla_2016
  40. meso_tcga_pan_can_atlas_2018
  41. mixed_allen_2018
  42. mixed_kunga_msk_2022
  43. mixed_msk_tcga_2021
  44. mixed_selpercatinib_2020
  45. mng_utoronto_2021
  46. mpcproject_broad_2021
  47. mpnst_mskcc
  48. msk_access_2021
  49. nsclc_tracerx_2017
  50. ov_tcga
  51. paad_cptac_2021
  52. paad_tcga_pan_can_atlas_2018
  53. pancan_pcawg_2020
  54. prad_eururol_2017
  55. prad_mcspc_mskcc_2020
  56. prad_msk_stopsack_2021
  57. prad_p1000
  58. prad_tcga_pan_can_atlas_2018
  59. rectal_msk_2022
  60. sarc_tcga_pan_can_atlas_2018
  61. sarcoma_mskcc_2022
  62. sclc_jhu
  63. skcm_broad
  64. skcm_dfci_2015
  65. skcm_mskcc_2014
  66. stad_oncosg_2018
  67. thca_tcga_pan_can_atlas_2018
  68. thym_tcga_pan_can_atlas_2018
  69. ucs_tcga_pan_can_atlas_2018
  70. vsc_cuk_2018

Cancer studies updated in this pull request (Rima):

  1. blca_tcga_pan_can_atlas_2018
  2. brca_tcga_pan_can_atlas_2018
  3. difg_glass_2019
  4. gbm_tcga_pan_can_atlas_2018
  5. hnsc_tcga_pan_can_atlas_2018
  6. lihc_tcga_pan_can_atlas_2018
  7. luad_tcga_pan_can_atlas_2018
  8. lusc_tcga_pan_can_atlas_2018
  9. ov_tcga_pan_can_atlas_2018
  10. prostate_pcbm_swiss_2019
  11. skcm_tcga_pan_can_atlas_2018
  12. stad_tcga_pan_can_atlas_2018
  13. ucec_tcga_pan_can_atlas_2018

@sbabyanusha sbabyanusha mentioned this pull request Sep 12, 2023
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Variants with protein change as MUTATED in public DB
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@sbabyanusha