What's Changed

• Add pytest 8.x compatibility by @mr-c in #92
• Allow post install testing by @mr-c in #93
• Fix include for strlen() by @mr-c in #94
• Re-enable doctesting of C extension modules by @nsoranzo in 2e46af6
• Support NumPy 2.0 by @nsoranzo in 335ca02
• Build musllinux wheels for Python 3.9-3.11. Skip PyPy wheels on i686 by @nsoranzo in fba2c50

New Contributors

• @mr-c made their first contribution in #92

Full Changelog: v0.11.0...v0.12.0

Breaking Changes

• Added support for Python 3.12.
• Dropped support for Python 3.7.

Other Changes

• Added musllinux wheels for Python 3.12.
• Restore docs building on https://bx-python.readthedocs.io/

Breaking Changes

• Added support for Python 3.11.
• Added arm64 macOS wheels. Dropped PyPy 3.7 Linux wheels and all PyPy 3.8 wheels.

Deprecations

• Support for Python 3.7 is deprecated.

Other Changes

• From NumPy 1.24.0 np.float is deprecated by @lldelisle in #90
• Fix exception message by @lldelisle in #89
• Fix compilation with Cython 3 by @mvdbeek in #91

Full Changelog: v0.9.0...v0.10.0

Breaking Changes

• Index TwoBitFile sequences by str not bytes by @nsoranzo in #85
• Skip building also other musllinux wheels by @nsoranzo in #86

Other Changes

• Fix new E275 linting error by @nsoranzo in #84
• Upgrade GitHub Actions by @cclauss in #83
• Format Python code with black and isort by @nsoranzo in #87

New Contributors

• @cclauss made their first contribution in #83

Full Changelog: v0.8.13...v0.9.0

What's Changed

• Improve MAF handling by @lldelisle in #77
• Drop support for Python 3.6, add 3.10 by @nsoranzo in 1283016

New Contributors

• @lldelisle made their first contribution in #77

Full Changelog: v0.8.12...v0.8.13

• Fix .so files not being copied to build and therefore not installed by python setup.py install .
• Distribute aarch64 wheels

• Build wheels using oldest-supported-numpy instead of the latest numpy. In this way, the generated wheels will be forward-compatible with newer numpy versions
• Remove runtime dependency on setuptools

Other packaging and testing changes:

• Use pyproject.toml to specify build requirements
• Execute build_ext when running sdist.
• Use PyPA build package to build the sdist.
• Move most metadata from setup.py to setup.cfg .
• Test built packages by importing

• Fix lzop_build_offset_table.py and maf_build_index.py scripts under Python 3. Pull Request #70
• Drop support for Python 2 and 3.5, add 3.9
• Add tox configuration for testing
• Move Continuous Integration from TravisCI to GitHub workflows

• Misc fixes, mainly for Python 3. PR #65

• Restore NiceReaderWrapper.current_line. Pull Request #58