Highlights
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powsimR Public
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and ev…
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basilisk Public
Forked from Bioconductor/basiliskClone of the Bioconductor repository for the basilisk package.
R GNU General Public License v3.0 UpdatedJul 11, 2023 -
simulation-comparison Public
Forked from HelenaLC/simulation-comparisonSnakemake workflow to benchmark scRNA-seq data simulators
R UpdatedNov 12, 2021 -
RgCop Public
Forked from Snehalikalall/RgCopRegularized Copula based Feature Selection
Jupyter Notebook UpdatedSep 8, 2021 -
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scRNA-seq-pipelines Public
Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
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cNMF Public
Forked from dylkot/cNMFCode and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
Jupyter Notebook MIT License UpdatedJan 26, 2021 -
zUMIs Public
Forked from sdparekh/zUMIszUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
R GNU General Public License v3.0 UpdatedSep 2, 2019 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellList of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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bookdown Public
Forked from rstudio/bookdownAuthoring Books and Technical Documents with R Markdown
R UpdatedMay 22, 2018 -
BISCUIT_SingleCell_IMM_ICML_2016 Public
Forked from sandhya212/BISCUIT_SingleCell_IMM_ICML_2016R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
R UpdatedMar 7, 2018 -
zinbwaveZinger Public
Forked from statOmics/zinbwaveZingerIntegrating zingeR with ZINB-WaVE weights
TeX UpdatedFeb 15, 2018 -
scRNA-tools Public
Forked from scRNA-tools/scRNA-toolsTable of software for the analysis of single-cell RNA-seq data.
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powsim Public
This package underwent major revisions and is now available as powsimR!
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LaTeX-proposal Public
Forked from KWARC/LaTeX-proposalThe Proposal package for LaTeX
TeX UpdatedJun 20, 2017 -
PyEng Public
Forked from shantnu/PyEngPython for engineers
Jupyter Notebook MIT License UpdatedMay 14, 2017 -
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colorRampPaletteAlpha Public
Forked from nknezek/colorRampPaletteAlphaHelper functions for adding transparency to colors in R and preserving the alpha channel when using colorRampPalette
R UpdatedMar 8, 2014