Skip to content

Issues: broadinstitute/pooled-cell-painting-profiling-recipe

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
15 Open 33 Closed
15 Open 33 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Normalize Single Cells by Site Method Development These issues discuss method-based improvements and testing question Further information is requested
#15 opened May 28, 2020 by gwaybio
1
Write a combine batches module enhancement New feature or request
#20 opened Jun 11, 2020 by ErinWeisbart Version 0.2 Release
Add command line option to reprocess files without overwriting existing data enhancement New feature or request
#36 opened Jul 28, 2020 by gwaybio
Include summary step for guide + guide abundances (cell count per perturbation) enhancement New feature or request
#56 opened Oct 23, 2020 by gwaybio Version 0.2 Release
12
Single cell normalization enhancement option enhancement New feature or request Method Development These issues discuss method-based improvements and testing
#57 opened Nov 23, 2020 by gwaybio
1
Aggregate fails when output_single_file_only option set to False Method Development These issues discuss method-based improvements and testing
#69 opened May 29, 2021 by gwaybio
1
Error in 4.image-and-segmentation-qc.py bug Something isn't working
#73 opened Jun 7, 2021 by gwaybio
@ErinWeisbart
2
Hardcoding Cells and Nuclei for threshold QC
#76 opened Jun 15, 2021 by gwaybio
Make folders only when necessary
#81 opened Oct 22, 2021 by ErinWeisbart
Change Skip Site/Overwrite Behavior in 0.preprocess-sites
#88 opened Nov 2, 2021 by ErinWeisbart
Add optional extra barcode preprocessing
#93 opened Oct 6, 2023 by ErinWeisbart
1
Pandas-2-ize the recipe
#94 opened Oct 8, 2023 by bethac07
QC plots: DAPI correlation in Nuclei
#95 opened Mar 29, 2024 by ErinWeisbart
Data split error in summarize-cells
#96 opened Jun 25, 2024 by ErinWeisbart
Something buggy in 0.preprocess-sites/0.prefilter-features.py
#97 opened Jul 12, 2024 by ErinWeisbart
ProTip! Updated in the last three days: updated:>2024-10-28.