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Tool for rapid clustering of antibody models by the structure of their CDRs.

Python 17 4 Updated Jun 18, 2024

The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

Jupyter Notebook 11 6 Updated Sep 21, 2023

The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

Jupyter Notebook 21 4 Updated Jul 8, 2024

KA-Search: Rapid and exhaustive sequence identity search of known antibodies

Jupyter Notebook 19 5 Updated Jul 9, 2024

Predict the structure of immune receptor proteins

Jupyter Notebook 102 26 Updated Jun 25, 2024

Predict the structure of immune receptor proteins

Jupyter Notebook 40 33 Updated Jun 25, 2024

Antibody paratope prediction using Graph Neural Networks with minimal feature vectors

Python 30 7 Updated Mar 18, 2023

KA-Search: Rapid and exhaustive sequence identity search of known antibodies

Jupyter Notebook 10 9 Updated Jul 9, 2024

Tool for modelling the CDRs of antibodies

Python 31 16 Updated Nov 10, 2022

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

Python 308 59 Updated Sep 3, 2023

Automated antibody database.

Python 3 3 Updated Oct 13, 2022

AbLang: A language model for antibodies

Python 111 22 Updated Sep 22, 2023
Python 90 18 Updated Apr 11, 2024

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Python 2,621 483 Updated Jul 8, 2024

Open source code for AlphaFold.

Python 12,119 2,155 Updated Jun 27, 2024

A library for programmatically generating equivariant layers through constraint solving

Jupyter Notebook 249 21 Updated May 8, 2023

Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network

Python 207 28 Updated Jun 2, 2024

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with th…

Python 10 Updated Jan 13, 2021