The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

Accurate sample inference from amplicon data with single nucleotide resolution

r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

Toolkit for processing sequences in FASTA/Q formats

Best-fit model selection

Versatile open-source tool for microbiome analysis

Scripts for analyzing Illumina-generated environmental DNA sequence data.