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9 stars written in Jupyter Notebook
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a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Jupyter Notebook 1,351 390 Updated Sep 17, 2024

GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data

Jupyter Notebook 210 46 Updated Sep 29, 2024

Mapping out the coarse-grained connectivity structures of complex manifolds.

Jupyter Notebook 206 33 Updated May 23, 2020

Microscopy Image Cytometry Toolkit

Jupyter Notebook 115 18 Updated Jul 15, 2022

A napari plugin for clustering objects according to their properties.

Jupyter Notebook 79 10 Updated Oct 14, 2024

Dynamic Time Warping in Python / C (using ctypes)

Jupyter Notebook 27 8 Updated Jul 14, 2021

Empirical dynamic modeling in scikit-learn's style

Jupyter Notebook 24 11 Updated Aug 15, 2017

License & Copyright © 2019 Varun Mannam, University of Notre Dame Licensed under the GPL.

Jupyter Notebook 22 6 Updated Apr 5, 2022

Collection of useful resources to understand neural manifold and their applications in Neuroscience.

Jupyter Notebook 3 Updated May 1, 2020