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Microscopy

7 repositories

OME-TIFF IO in python

Python 17 4 Updated Feb 3, 2024

License & Copyright © 2019 Varun Mannam, University of Notre Dame Licensed under the GPL.

Jupyter Notebook 19 5 Updated Apr 5, 2022

A tiny Python library for writing multi-channel TIFF stacks.

Python 27 2 Updated Jul 1, 2024

starfish: unified pipelines for image-based transcriptomics

Python 221 67 Updated May 28, 2024

GPU accelerated 3D image deconvolution using CUDA

C++ 30 14 Updated Jul 16, 2024

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs pro…

Python 7 Updated May 22, 2024

Python implementation of the BaSiC shading correction method

Python 7 1 Updated Jul 6, 2023