This repository has been completely superseded by https://github.com/mne-tools/mne-docker
I would suggest looking there for inspirational and starting points for docker/singularity images.
The goal of the repository is to have a full MNE environment within a docker container. To this includes supporting two funtionalities
- Full headless 2d/3d support with the ability to screenshot and use
mne.report - Support for jupyter lab
This is currently a WIP.
Two Dockerfiles are supplied. The first (Dockerfile) builds the core mne environment. The second (Dockerfile.test) installs the development version of mne to facilitate testing.
docker build -t mne_docker .
This can take a long time, particulalry for conda to 'solve the environment'.
Basic plot testing. Both need output directory. so make it (mkdir output) if needed.
-
$ docker run -it mne_docker mne sys_info QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-mne_user' Platform: Linux-5.8.0-55-generic-x86_64-with-glibc2.17 Python: 3.8.10 (default, Jun 4 2021, 15:09:15) [GCC 7.5.0] Executable: /home/mne_user/miniconda3/bin/python3.8 CPU: x86_64: 4 cores Memory: 19.0 GB mne: 0.23.0 numpy: 1.21.0 {blas=NO_ATLAS_INFO, lapack=lapack} scipy: 1.6.3 matplotlib: 3.4.2 {backend=Qt5Agg} sklearn: 0.24.2 numba: 0.53.1 nibabel: 3.2.1 nilearn: 0.8.0 dipy: 1.4.1 cupy: Not found pandas: 1.2.5 mayavi: 4.7.2 pyvista: 0.31.2 {pyvistaqt=0.5.0, OpenGL 4.5 (Core Profile) Mesa 20.2.6 via llvmpipe (LLVM 11.0.0, 256 bits)} vtk: 9.0.1 PyQt5: 5.12.3 -
Simple mne brain plot
$ docker run -it -v `pwd`/output:/home/mne_user/output mne_docker python mne_tests/test_mne_brain.py output/mne_brain.png Using pyvista 3d backend. QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-mne_user' <pyvistaqt.plotting.BackgroundPlotter object at 0x7f5e8567aaf0> min:0 - max:232 -
Make mne Reports
$ docker run -it -v `pwd`/output:/home/mne_user/output mne_docker python mne_tests/test_mne_report.py output/mne_rpt.html
Output files (mne_brain.png, mne_rpt.html) are in output directory.
This depends on the above image. So build it first, and then
docker build -t mne_docker_test . -f Dockerfile.test
$ docker run -it mne_docker_test mne_tests/launch_mne_tests.sh
Output
$ docker run -it mne_docker_test mne_tests/launch_mne_tests.sh
(base) bloyl@gorgas-linux:~/Projects/docker_stuff/mne_docker$ docker run -it mne_docker_test mne_tests/launch_mne_tests.sh
python setup.py build_ext -i
running build_ext
rm -f .coverage
py.test -m 'not ultraslowtest' mne
====================================================================== test session starts ======================================================================
platform linux -- Python 3.8.10, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
rootdir: /home/mne_user/mne-python, configfile: setup.cfg
plugins: cov-2.12.1, harvest-1.10.3, timeout-1.4.2
collecting 196 items QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-mne_user'
collected 3271 items / 2 deselected / 1 skipped / 3268 selected
mne/annotations.py s [ 0%]
mne/dipole.py s [ 0%]
mne/epochs.py ss [ 0%]
mne/event.py s. [ 0%]
mne/filter.py .s.. [ 0%]
mne/source_estimate.py s [ 0%]
mne/beamformer/tests/test_dics.py ................................................................ [ 2%]
mne/beamformer/tests/test_lcmv.py .......................................... [ 3%]
mne/minimum_norm/tests/test_inverse.py ....................................................................... [ 5%]
mne/viz/tests/test_3d.py .............. [ 6%]
mne/beamformer/tests/test_dics.py ........ [ 6%]
mne/beamformer/tests/test_external.py ..... [ 6%]
mne/beamformer/tests/test_lcmv.py .................................. [ 7%]
mne/beamformer/tests/test_rap_music.py ... [ 7%]
mne/beamformer/tests/test_resolution_matrix.py . [ 7%]
mne/channels/channels.py s [ 7%]
mne/channels/tests/test_channels.py ............... [ 8%]
mne/channels/tests/test_interpolation.py ............ [ 8%]
mne/channels/tests/test_layout.py ........ [ 8%]
mne/channels/tests/test_montage.py .............................
Normal return from subroutine COBYLA
NFVALS = 145 F = 1.724216E-03 MAXCV = 0.000000E+00
X = 7.754594E-04 6.880787E-03 4.739801E-02 9.490771E-02
.
Normal return from subroutine COBYLA
NFVALS = 145 F = 1.724216E-03 MAXCV = 0.000000E+00
X = 7.754594E-04 6.880787E-03 4.739801E-02 9.490771E-02
.
Normal return from subroutine COBYLA
NFVALS = 123 F = 1.657480E-03 MAXCV = 0.000000E+00
X = 7.603066E-04 6.746337E-03 4.647159E-02 9.305285E-02
.................. [ 10%]
mne/channels/tests/test_standard_montage.py ................................................. [ 11%]
mne/commands/tests/test_commands.py .....s.............. [ 12%]
mne/connectivity/tests/test_effective.py . [ 12%]
mne/connectivity/tests/test_envelope.py . [ 12%]
mne/connectivity/tests/test_spectral.py ................... [ 13%]
mne/connectivity/tests/test_utils.py .. [ 13%]
mne/datasets/eegbci/eegbci.py .. [ 13%]
mne/datasets/limo/limo.py . [ 13%]
mne/datasets/sleep_physionet/age.py . [ 13%]
mne/datasets/sleep_physionet/temazepam.py . [ 13%]
mne/datasets/sleep_physionet/tests/test_physionet.py X..........X. [ 13%]
mne/datasets/tests/test_datasets.py ....... [ 13%]
mne/decoding/receptive_field.py . [ 13%]
mne/decoding/tests/test_base.py ............... [ 14%]
mne/decoding/tests/test_csp.py ....... [ 14%]
mne/decoding/tests/test_ems.py . [ 14%]
mne/decoding/tests/test_receptive_field.py ............. [ 15%]
mne/decoding/tests/test_search_light.py ... [ 15%]
mne/decoding/tests/test_ssd.py ..... [ 15%]
mne/decoding/tests/test_time_frequency.py . [ 15%]
mne/decoding/tests/test_transformer.py ......... [ 15%]
mne/export/tests/test_export.py sss......... [ 15%]
mne/forward/_make_forward.py s [ 15%]
mne/forward/tests/test_field_interpolation.py ....... [ 16%]
mne/forward/tests/test_forward.py .....s.. [ 16%]
mne/forward/tests/test_make_forward.py .s..s... [ 16%]
mne/gui/tests/test_coreg_gui.py ..... [ 16%]
mne/gui/tests/test_fiducials_gui.py . [ 16%]
mne/gui/tests/test_file_traits.py ..... [ 17%]
mne/gui/tests/test_kit2fiff_gui.py .. [ 17%]
mne/gui/tests/test_marker_gui.py .. [ 17%]
mne/inverse_sparse/mxne_optim.py .. [ 17%]
mne/inverse_sparse/tests/test_gamma_map.py .. [ 17%]
mne/inverse_sparse/tests/test_mxne_debiasing.py . [ 17%]
mne/inverse_sparse/tests/test_mxne_inverse.py ....................... [ 18%]
mne/inverse_sparse/tests/test_mxne_optim.py ....... [ 18%]
mne/io/base.py ss [ 18%]
mne/io/pick.py . [ 18%]
mne/io/utils.py . [ 18%]
mne/io/array/tests/test_array.py ... [ 18%]
mne/io/artemis123/tests/test_artemis123.py .. [ 18%]
mne/io/boxy/tests/test_boxy.py ........ [ 18%]
mne/io/brainvision/tests/test_brainvision.py ........................... [ 19%]
mne/io/bti/tests/test_bti.py .............. [ 20%]
mne/io/cnt/tests/test_cnt.py .. [ 20%]
mne/io/ctf/tests/test_ctf.py ..s..s.. [ 20%]
mne/io/curry/tests/test_curry.py ..................xx............. [ 21%]
mne/io/edf/edf.py sss [ 21%]
mne/io/edf/tests/test_edf.py .......................................... [ 22%]
mne/io/edf/tests/test_gdf.py ..... [ 22%]
mne/io/eeglab/tests/test_eeglab.py ............... [ 23%]
mne/io/egi/tests/test_egi.py ............. [ 23%]
mne/io/eximia/tests/test_eximia.py . [ 23%]
mne/io/fieldtrip/tests/test_fieldtrip.py .................................................... [ 25%]
mne/io/fiff/tests/test_raw_fiff.py .............................................s................... [ 27%]
mne/io/hitachi/hitachi.py .. [ 27%]
mne/io/hitachi/tests/test_hitachi.py ............ [ 27%]
mne/io/kit/tests/test_coreg.py . [ 27%]
mne/io/kit/tests/test_kit.py ............ [ 28%]
mne/io/nedf/tests/test_nedf.py .... [ 28%]
mne/io/nicolet/tests/test_nicolet.py . [ 28%]
mne/io/nihon/tests/test_nihon.py . [ 28%]
mne/io/nirx/tests/test_nirx.py .................. [ 28%]
mne/io/persyst/tests/test_persyst.py ........ [ 29%]
mne/io/snirf/tests/test_snirf.py ............ [ 29%]
mne/io/tests/test_apply_function.py . [ 29%]
mne/io/tests/test_compensator.py .....s [ 29%]
mne/io/tests/test_constants.py ....... [ 29%]
mne/io/tests/test_meas_info.py .................................... [ 31%]
mne/io/tests/test_pick.py ............................... [ 31%]
mne/io/tests/test_proc_history.py . [ 31%]
mne/io/tests/test_raw.py .............. [ 32%]
mne/io/tests/test_read_raw.py ......... [ 32%]
mne/io/tests/test_reference.py ............. [ 33%]
mne/io/tests/test_show_fiff.py . [ 33%]
mne/io/tests/test_utils.py . [ 33%]
mne/io/tests/test_what.py . [ 33%]
mne/io/tests/test_write.py . [ 33%]
mne/minimum_norm/tests/test_inverse.py ............ [ 33%]
mne/minimum_norm/tests/test_resolution_matrix.py . [ 33%]
mne/minimum_norm/tests/test_resolution_metrics.py . [ 33%]
mne/minimum_norm/tests/test_snr.py s [ 33%]
mne/minimum_norm/tests/test_time_frequency.py ................ [ 34%]
mne/preprocessing/_peak_finder.py . [ 34%]
mne/preprocessing/_regress.py s [ 34%]
mne/preprocessing/nirs/tests/test_beer_lambert_law.py ........ [ 34%]
mne/preprocessing/nirs/tests/test_nirs.py ............. [ 34%]
mne/preprocessing/nirs/tests/test_optical_density.py ... [ 34%]
mne/preprocessing/nirs/tests/test_scalp_coupling_index.py ...... [ 35%]
mne/preprocessing/nirs/tests/test_temporal_derivative_distribution_repair.py . [ 35%]
mne/preprocessing/tests/test_artifact_detection.py .... [ 35%]
mne/preprocessing/tests/test_csd.py ... [ 35%]
mne/preprocessing/tests/test_ctps.py . [ 35%]
mne/preprocessing/tests/test_ecg.py . [ 35%]
mne/preprocessing/tests/test_eeglab_infomax.py . [ 35%]
mne/preprocessing/tests/test_eog.py . [ 35%]
mne/preprocessing/tests/test_fine_cal.py .... [ 35%]
mne/preprocessing/tests/test_flat.py ... [ 35%]
mne/preprocessing/tests/test_ica.py ..................................................................................................................... [ 39%]
............................ [ 40%]
mne/preprocessing/tests/test_infomax.py ...... [ 40%]
mne/preprocessing/tests/test_interpolate.py ......... [ 40%]
mne/preprocessing/tests/test_maxwell.py ............................. [ 41%]
mne/preprocessing/tests/test_otp.py .. [ 41%]
mne/preprocessing/tests/test_peak_finder.py . [ 41%]
mne/preprocessing/tests/test_realign.py ........................... [ 42%]
mne/preprocessing/tests/test_regress.py . [ 42%]
mne/preprocessing/tests/test_ssp.py ...... [ 42%]
mne/preprocessing/tests/test_stim.py . [ 42%]
mne/preprocessing/tests/test_xdawn.py ....... [ 42%]
mne/simulation/tests/test_evoked.py ... [ 42%]
mne/simulation/tests/test_metrics.py . [ 43%]
mne/simulation/tests/test_raw.py ....... [ 43%]
mne/simulation/tests/test_source.py ...... [ 43%]
mne/stats/_adjacency.py . [ 43%]
mne/stats/cluster_level.py . [ 43%]
mne/stats/tests/test_adjacency.py ......... [ 43%]
mne/stats/tests/test_cluster_level.py ........................................... [ 45%]
mne/stats/tests/test_multi_comp.py .. [ 45%]
mne/stats/tests/test_parametric.py .......................... [ 45%]
mne/stats/tests/test_permutations.py .. [ 45%]
mne/stats/tests/test_regression.py ... [ 46%]
mne/tests/test_annotations.py .......................................................... [ 47%]
mne/tests/test_bem.py .......... [ 48%]
mne/tests/test_chpi.py ............. [ 48%]
mne/tests/test_coreg.py ...... [ 48%]
mne/tests/test_cov.py ............................... [ 49%]
mne/tests/test_defaults.py .. [ 49%]
mne/tests/test_dipole.py ..s......... [ 50%]
mne/tests/test_docstring_parameters.py ... [ 50%]
mne/tests/test_epochs.py ......................................................................................................................... [ 53%]
mne/tests/test_event.py ............ [ 54%]
mne/tests/test_evoked.py .................................... [ 55%]
mne/tests/test_filter.py .s.................s....................................... [ 57%]
mne/tests/test_import_nesting.py . [ 57%]
mne/tests/test_label.py ...................... [ 57%]
mne/tests/test_line_endings.py . [ 57%]
mne/tests/test_misc.py . [ 57%]
mne/tests/test_morph.py ................................................................................................................................. [ 61%]
......................................................................................................................................................... [ 66%]
......................................................................................................................................................... [ 71%]
......................................................................................................................................................... [ 75%]
........ [ 76%]
mne/tests/test_morph_map.py . [ 76%]
mne/tests/test_ola.py .... [ 76%]
mne/tests/test_proj.py ............ [ 76%]
mne/tests/test_rank.py ........................................... [ 78%]
mne/tests/test_read_vectorview_selection.py . [ 78%]
mne/tests/test_report.py ....................... [ 78%]
mne/tests/test_source_estimate.py ........................................................................................... [ 81%]
mne/tests/test_source_space.py .......s.s...ss.............. [ 82%]
mne/tests/test_surface.py .......s.... [ 82%]
mne/tests/test_transforms.py .................... [ 83%]
mne/time_frequency/tests/test_ar.py .. [ 83%]
mne/time_frequency/tests/test_csd.py .............. [ 83%]
mne/time_frequency/tests/test_multitaper.py ss [ 83%]
mne/time_frequency/tests/test_psd.py ...... [ 84%]
mne/time_frequency/tests/test_stft.py ........................................ [ 85%]
mne/time_frequency/tests/test_stockwell.py ..... [ 85%]
mne/time_frequency/tests/test_tfr.py ............................. [ 86%]
mne/utils/_logging.py .. [ 86%]
mne/utils/config.py . [ 86%]
mne/utils/docs.py ... [ 86%]
mne/utils/misc.py . [ 86%]
mne/utils/mixin.py ss [ 86%]
mne/utils/tests/test_bunch.py . [ 86%]
mne/utils/tests/test_check.py ............... [ 87%]
mne/utils/tests/test_config.py ... [ 87%]
mne/utils/tests/test_docs.py ........ [ 87%]
mne/utils/tests/test_fetching.py . [ 87%]
mne/utils/tests/test_linalg.py .......................................................................................................................... [ 91%]
...................... [ 91%]
mne/utils/tests/test_logging.py ........ [ 92%]
mne/utils/tests/test_misc.py . [ 92%]
mne/utils/tests/test_numerics.py ........................................................... [ 94%]
mne/utils/tests/test_progressbar.py .... [ 94%]
mne/utils/tests/test_testing.py .... [ 94%]
mne/viz/_3d.py s [ 94%]
mne/viz/circle.py s [ 94%]
mne/viz/misc.py . [ 94%]
mne/viz/utils.py . [ 94%]
mne/viz/_brain/tests/test_brain.py ..........................s[swscaler @ 0x55f24d712980] Warning: data is not aligned! This can lead to a speed loss
[swscaler @ 0x55cbac150980] Warning: data is not aligned! This can lead to a speed loss
.. [ 95%]
mne/viz/_brain/tests/test_notebook.py ... [ 95%]
mne/viz/backends/tests/test_renderer.py ..x...... [ 95%]
mne/viz/backends/tests/test_utils.py .. [ 95%]
mne/viz/tests/test_3d.py ............................... [ 96%]
mne/viz/tests/test_3d_mpl.py ..... [ 96%]
mne/viz/tests/test_circle.py . [ 96%]
mne/viz/tests/test_epochs.py ................. [ 97%]
mne/viz/tests/test_evoked.py ........... [ 97%]
mne/viz/tests/test_figure.py .. [ 97%]
mne/viz/tests/test_ica.py ...... [ 97%]
mne/viz/tests/test_misc.py ......... [ 98%]
mne/viz/tests/test_montage.py ...... [ 98%]
mne/viz/tests/test_raw.py ...................... [ 99%]
mne/viz/tests/test_topo.py ...... [ 99%]
mne/viz/tests/test_topomap.py .............. [ 99%]
mne/viz/tests/test_utils.py ........... [100%]
==================================================================== slowest 20 test modules ====================================================================
229.39s total mne/viz/_brain/tests/
168.13s total mne/preprocessing/tests/
160.47s total mne/viz/tests/test_3d_mpl.py
159.39s total mne/minimum_norm/tests/
146.64s total mne/beamformer/tests/
111.80s total mne/viz/tests/test_3d.py
89.24s total mne/tests/test_morph.py
84.48s total mne/inverse_sparse/tests/
73.05s total mne/tests/test_epochs.py
67.16s total mne/tests/test_rank.py
61.37s total mne/tests/test_report.py
58.92s total mne/io/fiff/
46.66s total mne/tests/test_chpi.py
46.16s total mne/viz/tests/test_raw.py
44.42s total mne/tests/test_source_estimate.py
41.12s total mne/channels/tests/
35.77s total mne/forward/tests/
35.41s total mne/tests/test_source_space.py
34.77s total mne/viz/tests/test_epochs.py
34.01s total mne/decoding/tests/
======================================================================= warnings summary ========================================================================
mne/viz/backends/tests/test_renderer.py::test_3d_functions[mayavi]
mne/viz/backends/tests/test_renderer.py::test_3d_functions[mayavi]
/home/mne_user/miniconda3/lib/python3.8/asyncio/base_events.py:654: ResourceWarning: unclosed event loop <_UnixSelectorEventLoop running=False closed=False debug=False>
_warn(f"unclosed event loop {self!r}", ResourceWarning, source=self)
-- Docs: https://docs.pytest.org/en/stable/warnings.html
------------------------------------------------ generated xml file: /home/mne_user/mne-python/junit-results.xml ------------------------------------------------
===================================================================== slowest 20 durations ======================================================================
47.84s call mne/viz/tests/test_3d_mpl.py::test_plot_volume_source_estimates[stat_map-s-1-1-init_p3-want_p3-brain.mgz]
40.51s call mne/minimum_norm/tests/test_inverse.py::test_inverse_operator_channel_ordering[testing_data-testing_data]
39.31s call mne/viz/tests/test_3d_mpl.py::test_plot_volume_source_estimates[stat_map-vec-1-1-None-want_p1-None]
27.73s call mne/viz/tests/test_3d.py::test_plot_alignment[testing_data-testing_data-mayavi]
25.77s call mne/viz/tests/test_3d_mpl.py::test_plot_volume_source_estimates[glass_brain-s-None-2-None-want_p0-None]
25.57s call mne/viz/tests/test_3d_mpl.py::test_plot_volume_source_estimates[glass_brain-vec-None-1-init_p2-want_p2-None]
22.34s call mne/inverse_sparse/tests/test_mxne_inverse.py::test_mxne_inverse_standard[_pytest_param]
21.97s call mne/viz/tests/test_3d_mpl.py::test_plot_volume_source_estimates_morph
21.93s call mne/preprocessing/tests/test_fine_cal.py::test_compute_fine_cal
21.87s call mne/tests/test_report.py::test_render_report[mayavi]
21.06s call mne/tests/test_report.py::test_render_report[pyvista]
20.46s call mne/commands/tests/test_commands.py::test_make_scalp_surfaces
19.66s call mne/viz/_brain/tests/test_brain.py::test_brain_traces[pyvista-mixed-split]
19.20s call mne/viz/_brain/tests/test_brain.py::test_brain_traces[pyvista-mixed-both]
18.49s call mne/tests/test_chpi.py::test_calculate_chpi_coil_locs_artemis
18.34s call mne/tests/test_docstring_parameters.py::test_docstring_parameters
17.22s call mne/io/eeglab/tests/test_eeglab.py::test_io_set_epochs[fnames1]
16.04s call mne/viz/_brain/tests/test_notebook.py::test_notebook_interactive[notebook]
15.80s call mne/tests/test_morph.py::test_volume_source_morph_round_trip[sample-fsaverage-10-12-float-True]
14.95s call mne/tests/test_morph_map.py::test_make_morph_maps
==================================================================== short test summary info ====================================================================
SKIPPED [1] ../miniconda3/lib/python3.8/site-packages/_pytest/doctest.py:535: unable to import module local('/home/mne_user/mne-python/mne/datasets/_infant/base.py')
SKIPPED [19] ../miniconda3/lib/python3.8/site-packages/_pytest/doctest.py:448: all tests skipped by +SKIP option
SKIPPED [1] mne/commands/tests/test_commands.py:83: Test test_clean_eog_ecg skipped, requires MNE-C.
SKIPPED [1] mne/export/tests/test_export.py:28: eeglabio not installed
SKIPPED [2] mne/export/tests/test_export.py:49: eeglabio not installed
SKIPPED [1] mne/forward/tests/test_forward.py:361: Test test_average_forward_solution skipped, requires MNE-C.
SKIPPED [1] mne/forward/tests/test_make_forward.py:121: Test test_make_forward_solution_kit skipped, requires MNE-C.
SKIPPED [1] mne/forward/tests/test_make_forward.py:250: Test test_make_forward_solution_sphere skipped, requires MNE-C.
SKIPPED [1] mne/io/ctf/tests/test_ctf.py:266: Requires spm dataset
SKIPPED [1] mne/io/ctf/tests/test_ctf.py:322: Requires brainstorm dataset
SKIPPED [1] mne/io/fiff/tests/test_raw_fiff.py:1556: Test test_compensation_raw_mne skipped, requires MNE-C.
SKIPPED [1] mne/io/tests/test_compensator.py:73: Test test_compensation_mne skipped, requires MNE-C.
SKIPPED [1] mne/minimum_norm/tests/test_snr.py:23: Test test_snr skipped, requires MNE-C.
SKIPPED [1] mne/tests/test_dipole.py:99: Test test_dipole_fitting skipped, requires MNE-C.
SKIPPED [1] mne/tests/test_filter.py:30: Test test_mne_c_design skipped, requires MNE-C.
SKIPPED [1] mne/tests/test_filter.py:558: CUDA not enabled
SKIPPED [1] mne/tests/test_source_space.py:257: Test test_discrete_source_space skipped, requires MNE-C.
SKIPPED [1] mne/tests/test_source_space.py:349: Test test_other_volume_source_spaces skipped, requires MNE-C.
SKIPPED [2] mne/tests/test_source_space.py:498: Test test_setup_source_space_spacing skipped, requires MNE-C.
SKIPPED [1] mne/tests/test_surface.py:182: Test test_decimate_surface_sphere skipped, requires Freesurfer (mris_sphere). Got exception ([Errno 2] No such file or directory: 'mris_sphere')
SKIPPED [1] mne/time_frequency/tests/test_multitaper.py:14: Test test_dpss_windows skipped, requires nitime. Got exception (No module named 'nitime')
SKIPPED [1] mne/time_frequency/tests/test_multitaper.py:39: Test test_multitaper_psd skipped, requires nitime. Got exception (No module named 'nitime')
SKIPPED [1] mne/viz/_brain/tests/test_brain.py:395: Save movie only supported on PyVista
XFAIL mne/io/curry/tests/test_curry.py::test_sfreq[both 0]
XFAIL mne/io/curry/tests/test_curry.py::test_sfreq[mismatch]
XFAIL mne/viz/backends/tests/test_renderer.py::test_backend_environment_setup[foo]
XPASS mne/datasets/sleep_physionet/tests/test_physionet.py::test_run_update_age_records
XPASS mne/datasets/sleep_physionet/tests/test_physionet.py::test_run_update_temazepam_records
================================= 3222 passed, 43 skipped, 2 deselected, 3 xfailed, 2 xpassed, 2 warnings in 2478.84s (0:41:18) =================================
- Install freesurfer (maybe only the parts that are called from
mne-python) - Add jupyter lab support preferably as standalone image.
- Add support for mne versioning
- Potentially remove python dependencies to reduce image size.