PfO3 is a python module written in rust to process numpy ndarrays (e.g. the "call_genotype" variable of the malariagen-data callset) quickly.

THIS MODULE IS A WORK IN PROGRESS AND IS NOT PRODUCTION-READY

To build and install PfO3 using the source code in this repository, you must first install rust and maturin.

Then you can install the python package locally using the following commands:

❯ git clone https://github.com/bjeight/PfO3.git
❯ cd PfO3
❯ maturin build --release
📦 Built wheel for CPython 3.11 to /path/to/wheels/PfO3-0.1.0-cp311-cp311-macosx_11_0_arm64.whl
❯ python3 -m pip install /path/to/wheels/PfO3-0.1.0-cp311-cp311-macosx_11_0_arm64.whl

Then you can simply import PfO3 in your python scripts

import PfO3