Fix typo

Merge pull request #601 from t0mdavid-m/fix_numpy

`Numpy 2.0` is used when installing `Biotite`via pip.

Bump minor version

Merge pull request #548 from padix-key/version-bump

Bump minor version

Bump minor version

Bump minor version

Deprecate `atom_mask` parameter in `connect_via_xxx()` functions (#474)

* Docstring fixes

* Fix bug in polymer type detection

* Fix docstring

* Fix tests

* Retain bond order

* Adapt docstrings

* Do not mask atoms, as this has no effect

* Fix test

* Deprecate `atom_mask` parameter in `connect_via_xxx()` functions

Bump patch version

Bump minor version

Update database error messages