Biological evolution simulator

ALIEN is a CUDA-powered artificial life simulation program.

Cross-platform, graphics API agnostic, "Bring Your Own Engine/Framework" style rendering library.

Cross-platform Text Expander written in Rust

Python 3 + PyGame implementation of javid9x's 2d circle resolution tutorial part 1

Efficient phylogenomic software by maximum likelihood

Docker and Server Images for Hackathons and Hackathon Products

‘Phylogenetic Aware Parsing Script’ (PAPS for short) is the last of a pipeline of three Perl scripts which allows the user to produce lists of homologous genes (proteins clustered using MCL) based …

template, example, and instructions on how to make an a priori phylogenetic protocol

Distributed Evolutionary Algorithms in Python

Example lesson using The Carpentries lesson template.

Phylogenetic analysis in R

Conversations about teaching computational skills to undergraduates

Logistical details, Suggestions for discussion topics, Agenda

A Grammar of Graphics for Python

Composition of Likelihoods for Evolve And Resequence Experiments

Python module for processing crash reports

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

A list of useful bioinformatics resources

View and stop running IPython notebook servers

MMseqs2: ultra fast and sensitive search and clustering suite

Visualize Python code execution (line-by-line) in Jupyter Notebook cells.

Phylogenetic orthology inference for comparative genomics

Recursive Dynamic Markov clustering

Python library to facilitate genome assembly, annotation, and comparative genomics

Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Python library to simulate evolutionary sequence data