A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.

Versatile open-source tool for microbiome analysis

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

Accurate sample inference from amplicon data with single nucleotide resolution

This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, su…