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Blast update #28969

Merged
merged 5 commits into from
Jun 14, 2021
Merged

Blast update #28969

merged 5 commits into from
Jun 14, 2021

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r78v10a07
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Adding new config option to the blast recipe

@r78v10a07
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We add a new configure option: --with-experimental=Int8GI required due to the introduction of large GIs in the database.
Current Blast command in Bioconda gives segfault due to this missing option.
I tried to recompile the Blast package but it fail.
Can anyone have a look?

@dpryan79
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It looks like the issue was the default -std=c++17, which apparently breaks the build

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Artifacts built on CircleCI are ready for inspection:

Package(s)
Arch Package Repodata
linux-64 blast-2.11.0-pl5262h3289130_1.tar.bz2 repodata.json
osx-64 blast-2.11.0-pl5262h78c34c6_1.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on linux-64:
conda install -c https://157757-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
  • For packages on osx-64:
conda install -c https://157763-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Container image(s)
Package Tag Install with docker
blast 2.11.0--pl5262h3289130_1
showcurl -L "https://157757-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/blast%3A2.11.0--pl5262h3289130_1.tar.gz" | gzip -dc | docker load

@dpryan79
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@r78v10a07 I have fixed the build and enabled the flag in question. Let me know if you see any other issues. If not you can go ahead and start a comment with @bioconda-bot please merge to have the PR merged.

@BiocondaBot
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Artifacts built on CircleCI are ready for inspection:

Package(s)
Arch Package Repodata
linux-64 blast-2.11.0-pl5262h3289130_1.tar.bz2 repodata.json
osx-64 blast-2.11.0-pl5262h78c34c6_1.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on linux-64:
conda install -c https://158056-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
  • For packages on osx-64:
conda install -c https://158070-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Container image(s)
Package Tag Install with docker
blast 2.11.0--pl5262h3289130_1
showcurl -L "https://158056-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/blast%3A2.11.0--pl5262h3289130_1.tar.gz" | gzip -dc | docker load

@r78v10a07 r78v10a07 self-assigned this Jun 14, 2021
@r78v10a07
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@BiocondaBot please fetch artifacts

@BiocondaBot
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Artifacts built on CircleCI are ready for inspection:

Package(s)
Arch Package Repodata
linux-64 blast-2.11.0-pl5262h3289130_1.tar.bz2 repodata.json
osx-64 blast-2.11.0-pl5262h78c34c6_1.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on linux-64:
conda install -c https://158056-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
  • For packages on osx-64:
conda install -c https://158070-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Container image(s)
Package Tag Install with docker
blast 2.11.0--pl5262h3289130_1
showcurl -L "https://158056-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/blast%3A2.11.0--pl5262h3289130_1.tar.gz" | gzip -dc | docker load

@r78v10a07 r78v10a07 merged commit 199cb07 into master Jun 14, 2021
@r78v10a07 r78v10a07 deleted the blast-update branch June 14, 2021 16:27
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3 participants