Tags: bids-standard/pybids
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Version 0.17.0 (July 29, 2024) Feature release in the 0.17.0 series. This release includes experimental support for MRS (BEP22) datasets and `universal_pathlib <https://github.com/fsspec/universal_pathlib>`__. * ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support (#1074) * ENH: Add MRS entities, path patterns (#1075) * STY: No parentheses after assert (#1065) * MNT: Bump bids-examples from `47c4da1` to `401f4cf` (#1073) * MNT: Fix typo newly found by codespell (#1066)
Version 0.16.5 (May 22, 2024) Bug-fix release in the 0.16.x series. This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities. * FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049) * FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059) * ENH: Update indexer to treat .zarr as files not dirs (#1046) * DOC: Deal with several warnings and errors in the doc build (#1061) * TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060) * MNT: Add Python 3.12 support (#1057) * MNT: Use tox to simplify testing environment setup (#1055) * MNT: Bump codecov/codecov-action from 3 to 4 (#1041) * MNT: Bump bids-examples from `1a000d6` to `eff47f1` (#1039) * MNT: Bump bids-examples from `b6e5234` to `1a000d6` (#1038) * MNT: Bump actions/upload-artifact from 3 to 4 (#1037) * MNT: Bump actions/setup-python from 4 to 5 (#1036)
Version 0.16.3 (August 16, 2023) Bug-fix release in the 0.16.x series. This release resolves a regression introduced in 0.16.2 when JSON sidecar files contain ``null`` values. * FIX: Drop JSON sidecar fields with null values during metadata indexing (#1016)
Version 0.16.2 (August 11, 2023) -------------------------------- Bug-fix and performance release in the 0.16.x series. Notably, indexing is now significantly faster (2-2.5x). * ENH: Speed up indexing by bulk committing to database (#1013) * Include indexer in add_derivatives call (#1009) * Bump bids-examples from `8550641` to `75968b9` (#1008) * Bump bids-examples from `e96b702` to `8550641` (#1007) * Bump bids-examples from `d8455af` to `e96b702` (#1005) * Bump bids-examples from `bc36231` to `d8455af` (#1003) * CI: Use OIDC publishing instead of tokens (#1001)
Version 0.16.1 (May 01, 2023) Bug-fix release in the 0.16.x series. * FIX: Improve parsing of suffix/extension in non-BIDS files (#997) * FIX: Support use of Query enums in filter lists (#994) * MNT: Clean up imports in documentation scripts (#980) * MNT: update zenodo (#995) * CI: Update Python version for doc/sdist/wheel tests (#996)
Version 0.16.0 (April 26, 2023) New feature release in the 0.16.x series. * FIX: Adapt to SQLAlchemy 1.4+ (#985) * FIX: Fill na with zero for VIF (#976) * ENH: Only warn if missing values not explicitly set (#977) * ENH: Create run reports of whole graph / create HTML reports (#918) * ENH: Speed up Sparse to Dense BIDSVariable conversion (#969) * ENH: Update config to support motion and nirs modalities (#965) * REF: Add derivative subdatasets in a less ad hoc fashion (#954) * MNT: Update minimum dependencies, add CI job to test them (#987) * MNT: Drop jinja2/markupsafe constraints (#986) * MNT: Fix ruff issue E712 (#981) * MNT: A few Python3 updates (#971) * MNT: Drop Python 3.7 EOL (#974) * MNT: Fix repeat-word typo (#968) * MNT: Update vendored inflect to 5.6.2 (#961) * MNT: Fix flake8 issues found by ruff (#955) * MNT: Remove (large) unused PNG from doc directory (#962) * MNT: https:// → https:// (#960) * MNT: Update git submodules (#964) * CI: Drop codecov PyPI package and appveyor config (#979) * CI: Add Python 3.11 (#975) * CI: Replace custom update_submodules action with dependabot action (#967) * CI: fix errors caused by changes in examples (#963) * CI: Update parameters to gh-action-pypi-publish (#957)
Version 0.15.6 (February 28, 2023) Bug-fix release in 0.15.x series. * FIX: Exclude non-Hashables from set in .get(return_type='id') (#948) * FIX: Broken pattern matching (#936) * FIX: Coerce oversampling parameter in convolution to int (#929) * FIX: Allowing custom BIDS configuration files for derivative datasets (#922) * FIX: Address change in default pandas grouping behavior (#917) * ENH: Speed up BIDSLayout.get(return_type='id', ...) (#942) * ENH: Update default anat filename patterns in config (#933) * DOC: Make clear how to ignore folders (#945) * DOC: Fix tutorial link in README (#944) * DOC: Mention conda installation in README (#928) * MNT: Update git submodules (#946 + #943 + #932) * MNT: Move package metadata to pyproject.toml, unvendor versioneer (#907) * MNT: Bump formulaic max version constraint to include 0.5.x (#916)
Version 0.15.5 (November 07, 2022) Bug-fix release in 0.15.x series. * FIX: Use kwargs for DataFrame.pivot() (#913) * ENH: Add transformation history to ``BIDSStatsModelsNodeOutput`` (#905) * ENH: Update examples, add to sphinx, and convert to .md (#908) * ENH: More helpful __repr__ in modeling (#906) * MNT: Update git submodules (#911) * MNT: Bump peter-evans/create-pull-request from 3 to 4 (#904) * CI: Automatically update GitHub Actions in the future (#903)
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