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@bids-apps

BIDS Apps

A collection of containerized neuroimaging workflows and pipelines that accept datasets organized according to the Brain Imaging Data Structure (BIDS).
README.md

👋 Welcome to the BIDS Apps github organization 👋

Click the following link if you want to view the BIDS Apps website.

If you want to learn more about BIDS in general, have a look at the bids-standard GitHub organization.

For generic BIDS related question use the NeuroStars Discourse Forum, under the bids tag.

Otherwise feel free to open an issue on any of those repositories if you have specific questions or requests

As a reminder, all contributors have to adhere to our Code of Conduct.

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  1. dockerfile-templates dockerfile-templates Public

    Dockerfile templates commonly used in BIDS Apps

    Dockerfile 10 7

  2. example example Public template

    This an example app that can serve as a template.

    Python 16 31

  3. bids-apps.github.io bids-apps.github.io Public

    Portable neuroimaging pipelines that understand BIDS datasets

    CSS 3 14

  4. maintenance-tools maintenance-tools Public

    Shell

Repositories

Showing 10 of 42 repositories
  • giga_connectome Public

    generate connectome from fMRIPrep outputs

    bids-apps/giga_connectome’s past year of commit activity
    Python 3 MIT 4 14 1 Updated Jul 8, 2024
  • bids-apps.github.io Public

    Portable neuroimaging pipelines that understand BIDS datasets

    bids-apps/bids-apps.github.io’s past year of commit activity
    CSS 3 14 1 2 Updated Jun 27, 2024
  • matlab-compiler-runtime Public

    Base image with Matlab Compiler Runtime (MCR)

    bids-apps/matlab-compiler-runtime’s past year of commit activity
    Python 2 1 1 0 Updated Jun 18, 2024
  • maintenance-tools Public
    bids-apps/maintenance-tools’s past year of commit activity
    Shell 0 0 7 0 Updated Jun 18, 2024
  • example Public template

    This an example app that can serve as a template.

    bids-apps/example’s past year of commit activity
    Python 16 Apache-2.0 31 3 0 Updated May 28, 2024
  • PyMVPA Public

    runs MVPA and RSA analysis BIDS bold derivative data

    bids-apps/PyMVPA’s past year of commit activity
    Python 7 3 3 2 Updated May 7, 2024
  • baracus Public

    Predicts brain age, based on data from Freesurfer 5.3

    bids-apps/baracus’s past year of commit activity
    Python 9 Apache-2.0 9 5 1 Updated Apr 30, 2024
  • SyntheticDiffusion Public
    bids-apps/SyntheticDiffusion’s past year of commit activity
    Python 1 0 1 0 Updated Apr 30, 2024
  • DPARSF Public

    Docker version of DPARSF, also deployed at OpenNeuro.org

    bids-apps/DPARSF’s past year of commit activity
    MATLAB 3 4 2 1 Updated Apr 30, 2024
  • BrainSuite Public

    BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

    bids-apps/BrainSuite’s past year of commit activity
    Python 9 3 0 0 Updated Apr 30, 2024
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