moved nucleotide table out of json and into Util.js directly

js/Store/Util.js

@@ -1,22 +1,36 @@
 define('NucleotideDensityPlugin/Store/Util',[
  'dojo/_base/declare',
  'dojo/_base/array',
- 'dojo/_base/lang',
- 'dojo/json',
- 'dojo/text!plugins/NucleotideDensityPlugin/nucleotide_table.json'
+ 'dojo/_base/lang'
 ],
 function(
  declare,
  array,
- lang,
- JSON,
- nucleotidetable
+ lang
 ){
  /*
  Utility class dealing with degenerate nucleotide sequences
  */
  var Util;
- var ntable = JSON.parse(nucleotidetable);
+
+ var ntable = {
+ "A": ["A"],
+ "C": ["C"],
+ "G": ["G"],
+ "T": ["T"],
+ "U": ["T"],
+ "R": ["A", "G"],
+ "Y": ["C", "T"],
+ "S": ["C", "G"],
+ "W": ["A", "T"],
+ "K": ["G", "T"],
+ "M": ["A", "C"],
+ "B": ["C", "G", "T"],
+ "D": ["A", "G", "T"],
+ "H": ["A", "C", "T"],
+ "V": ["A", "C", "G"],
+ "N": ["A", "C", "G", "T"]
+ }
 
  Util = {
 

js/main.js

@@ -12,7 +12,7 @@ return declare( JBrowsePlugin,
  var browser = args.browser;
 
  // do anything you need to initialize your plugin here
- console.log( "NucleotideDensityPlugin plugin starting" );
+ console.log( "NucleotideDensityPlugin starting" );
  // register new track type
 
  browser.registerTrackType({