cleaned up code

bhofmei · Jun 23, 2017 · 68659a8 · 68659a8
1 parent 3e1f761
commit 68659a8
Showing 1 changed file with 0 additions and 11 deletions.
diff --git a/js/Store/SeqFeature/NucDensity.js b/js/Store/SeqFeature/NucDensity.js
@@ -66,17 +66,11 @@ function(
  //console.log(residues.length);
  for (var i = hw; i < residues.length - hw; i += thisB.windowDelta) {
 
- //console.log(thisB.nuc);
  var r = residues.slice(i - hw, i + hw);
  var rn = r.length - thisB.nucLength;
  var nc = 0;
  var ng = 0;
  for (var j = 0; j < rn; j++) {
- /*if (r[j] === 'c' || r[j] === 'C') {
- nc++;
- } else if (r[j] === 'g' || r[j] === 'G') {
- ng++;
- }*/
  var rs = r.slice(j, j+thisB.nucLength);
  if(array.indexOf(thisB.nucAr, rs.toUpperCase()) !== -1)
  nc++;
@@ -93,11 +87,6 @@ function(
  thisB.stats.min = score;
  if(score > thisB.stats.max)
  thisB.stats.max = score;
- /*if (thisB.gcMode === 'content') {
- score = (ng + nc) / r.length;
- } else if (thisB.gcMode === 'skew') {
- score = (ng - nc) / (ng + nc);
- }*/
  var n = thisB.nuc;
 
  var feat = new CoverageFeature({