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can't downlo the Datasets (for example:CCLE) #220

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Patrickstar-flash opened this issue Apr 1, 2022 · 2 comments
Closed

can't downlo the Datasets (for example:CCLE) #220

Patrickstar-flash opened this issue Apr 1, 2022 · 2 comments

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@Patrickstar-flash
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CCLE <- downloadPSet(CCLE)
Error in downloadPSet(CCLE) : object 'CCLE' not found

@ChristopherEeles
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ChristopherEeles commented Apr 1, 2022

Hi @Patrickstar-flash,

It looks like you are passing a variable instead of a string to the function, add quotes around the dataset name. Also note that the string needs to match the PSet Name column of the table returned by availablePSets(), so "CCLE" needs to be "CCLE_2015".

See the documentation in ?availablePSets and ?downloadPSet for more information.

Best,
Christopher Eeles
Software Developer | BHK Lab | PM-Research

@Patrickstar-flash
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Thanks,but I still can't download the datasets,I got this two lines R code from the
https://pharmacodb.pmgenomics.ca/pharmacogx.
I want to ask, if there is another way , if I download the dataset by browser, how could I put it in the pakages?
sorry, english is not good, am I clear?

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