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MFannot is a program for the annotation of mitochondrial and plastid genomes

Perl 17 6 Updated Oct 2, 2023

Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)

HTML 8 15 Updated Nov 8, 2024

SynGenes is a repository of synonymous genes providing reliable and comprehensive information of gene synonyms and alternate names to facilitate genetic research and improve understanding of geneti…

Python 3 Updated Nov 12, 2024

A modular, python-based framework for mass spectrometry. Powered by nbdev.

HTML 168 31 Updated Apr 19, 2024

Write sentry logentries directly into your journald, what could possibly go wrong?

Go 1 Updated Mar 8, 2024

This contains metaDEGalaxy scripts and wrappers for Galaxy Instance

R 1 1 Updated Aug 28, 2023

mPies: metaProteomics in environmental sciences

Python 6 2 Updated Sep 23, 2022
Python 2 2 Updated Jun 26, 2024

MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.

Shell 87 9 Updated Aug 13, 2024

Command line utility for querying tool metadata on a Galaxy instance and performing various tasks

Python 2 Updated Oct 19, 2023

The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra

Python 31 11 Updated Oct 30, 2024

Galaxy tools for image analysis

Python 15 17 Updated Oct 17, 2024

Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets

Python 8 6 Updated Nov 3, 2024

Lightweight lockfile for conda environments

Python 495 103 Updated Nov 11, 2024

An efficient library to read from new and old format .conda and .tar.bz2 conda packages.

Python 10 9 Updated Nov 11, 2024

Keep code, data, containers under control with git and git-annex

Python 542 111 Updated Nov 1, 2024

Planemo scripting to monitor repositories and register tool containers.

Shell 9 13 Updated Oct 4, 2024

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Jupyter Notebook 369 41 Updated Nov 5, 2024

Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, Roles) to appropriate job destinations based on a configurabl…

Python 13 12 Updated Sep 13, 2024

Official QIIME 2 tools for Galaxy

Python 1 5 Updated Oct 30, 2024

Galaxy wrappers for FROGS

HTML 2 12 Updated May 17, 2024

📣 Galaxy Tools for Computational Chemistry

Python 14 16 Updated Jul 22, 2024

Generate Galaxy tool descriptions automatically from QIIME 2 actions.

Python 19 18 Updated Oct 23, 2024

Tool Shed repositories maintained by the Intergalactic Utilities Commission

HTML 162 436 Updated Nov 13, 2024

Automated creation of Galaxy libraries from

Python 1 1 Updated May 11, 2023

DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm

C 48 23 Updated Oct 9, 2024

Conda recipes for the bioconda channel.

Shell 1,646 3,276 Updated Nov 14, 2024

Set of Galaxy tool wrappers developed at RECETOX

Python 13 13 Updated Nov 11, 2024

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

Python 187 60 Updated Nov 11, 2024
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