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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 120 37

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 114 13

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 113 9

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 94 23

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 73 30

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 50 6

Repositories

Showing 10 of 69 repositories
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Jupyter Notebook 0 AGPL-3.0 1 0 0 Updated Jul 19, 2024
  • dLGN_movie_spline_model Public

    dLGN movie spline LNP model

    berenslab/dLGN_movie_spline_model’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 0 0 0 Updated Jul 19, 2024
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    berenslab/fundus_image_toolbox’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Jul 17, 2024
  • interpretable-deep-survival-analysis Public

    An interpretable end-to-end CNN for disease progression modeling that predicts late AMD onset (MICCAI 2024)

    berenslab/interpretable-deep-survival-analysis’s past year of commit activity
    Python 0 0 0 0 Updated Jul 17, 2024
  • chatgpt-excess-words Public

    Delving into ChatGPT usage in academic writing through excess vocabulary

    berenslab/chatgpt-excess-words’s past year of commit activity
    Jupyter Notebook 27 MIT 3 0 0 Updated Jul 3, 2024
  • ne_spectrum_scRNAseq Public
    berenslab/ne_spectrum_scRNAseq’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Jun 27, 2024
  • medical-t-simcne Public

    This repository contains the codes to train a t-SimCNE model. This model has been shown to produce good representations on natural and medical images.

    berenslab/medical-t-simcne’s past year of commit activity
    Python 3 1 0 0 Updated Jun 24, 2024
  • retimgtools Public

    Web-based tools for retinal image annotation and evaluation.

    berenslab/retimgtools’s past year of commit activity
    Python 1 0 0 0 Updated Jun 4, 2024
  • DiffusionTempering Public
    berenslab/DiffusionTempering’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 29, 2024
  • retinal-rl-models Public

    Code for the pytorch models used in the retinal-rl project (and related non-rl usages)

    berenslab/retinal-rl-models’s past year of commit activity
    Python 0 0 5 0 Updated May 29, 2024
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