Minimalist ML framework for Rust

JTK -- a regional diploid genome assembler

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

PECAT, a phased error correct and assembly tool

Fast hash function for DNA/RNA sequences

Personal collection of scripts for installing Lmod modules

C implementation of the Landau-Vishkin algorithm

min-cost-flow(circulation) with convex cost function on petgraph

Rust implementation of the Loopy Belief propagation algorithm for inference in Bayesian Networks

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

software tools for haplotype assembly from sequence data

diploid SNV caller for error-prone reads

コードで学ぶAWS入門

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Nonconvex embedded optimization: code generation for fast real-time optimization

Generate interactive dotplot from mummer4 output using plotly

Imitating Keras to Deepen understanding.

Rust bindings for the Python interpreter

A fast static site generator in a single binary with everything built-in. https://www.getzola.org

Static site generator written in Rust

The Hacker's Machine Learning Engine

Mummer alignment tool

Pairwise Sequence Alignment Library

Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.