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[CHR-1152] - fix pom structure #15
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mattecasu
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* chr-1152 - fix pom * chr-1152 - fix pom
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* chr-1152 - fix pom * chr-1152 - fix pom
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* [core] do NOT perform empty commit when staging area is not dirty * [commons] Update changed component reporting in StagingArea (WIP) * Revert "[commons] Update changed component reporting in StagingArea (WIP)" This reverts commit e126b95. * [core] add all objects as changed to the commit notification * [core] make UpdateRequest context customizable * [core] replace `BranchContextProvider` with openBranch method Also, replace TransactionContextProvider with openTransaction methods. * [core] bind the User to the job execution context * [locks] add new Locks API to build a lock context Migrate all existing Lock contexts to the new API. * [snomed] add a lock context around RF2 import * [core] throw NotFoundException from CodeSystemRequests.getCodeSystem(). ...instead of BadRequestException * [snomed] Add missing reference set type in SnomedVersioningRequest * [core.tests] Add IdentityProvider.NOOP to JobRequestsTest context * [core] use generic context in UpdateRequestBuilder * [releng] add missing Bundle-Vendor header * [build] install/deploy at the end of the maven build * [build] use https for all p2 sites * [build] disable Jenkins artifactPublisher * [snomed] rename method importJobId to importJobKey * [core] support async execution of CodeSystemVersionCreateRequests * Revert "[build] disable Jenkins artifactPublisher" This reverts commit c362c62. * Revert "[build] install/deploy at the end of the maven build" This reverts commit 5fe4eb0. * [export] Allow exporting members with inactive referenced components * [core] allow deleted version branches to be reused for versioning * [core] require each terminology repository plugin to implement... ...a ConceptSearchRequestEvaluator. * [index] add commented out disk threshold configs * [index] add the current revision if we mark it as revised * [index] fix waitUntilValue implementation Let the memoizer decide whether it needs to check the value again or not without enforcing it with a 0 reset value. * [index] fix waitUntilValue implementation Check the value first and then waitUntil the value becames acceptable. * [core] generate unique ID for code system version documents * [releng] update changelog with 7.5.0 changes * [releng] release 7.5.0 * [releng] update release links * [releng] update release links * [releng] prepare 7.5.1-SNAPSHOT * [releng] prepare 7.5.1-SNAPSHOT (logback) * [api] allow any path under the specified apiBaseUrl... ...to be part of the docs * Revert "Revert "[build] install/deploy at the end of the maven build"" This reverts commit 033b9c4. * Revert "Revert "[build] disable Jenkins artifactPublisher"" This reverts commit 8d6702f. * SO-3965: Add lock context to non-SNOMEDCT import requests * [build] create the p2 site as main maven module artifact... ...as opposed to additional attached artifact The previous state prevented installation and deployment of additional artifacts produced by the `server.update` module because there were no main artifact(s) attached to this build. This fixes installAtEnd and deployAtEnd issue and allows the usage of the maven-deployer-extension. * [build] remove custom p2 site filename * [build] append oss suffix to packageFiles * [build] append oss suffix to packageFiles parent folder * Refactored branch-isolated support, provided core API equivalent. * Added utility method to find the concept-type component ID. * [docs] initial version of SNOMED CT Extension Guides * GitBook: [7.x] 95 pages modified * Revert "GitBook: [7.x] 95 pages modified" This reverts commit eede338. * [docs] remove old documentation project * [docs] add basic international and extension... ...commit graph renders * [docs] add extension from scratch image * [docs] add basic edition structure image Add images to single edition page. * [docs] add multi extension scenario * [docs] add deep extension images * [docs] add extension development and release docs * SO-3998: Change extensionOf property type to CodeSystemURI * SO-3998: Decrease visibility of FHIR CodeSystem constructor * Minor non-substantive cleanup * Minor non-substantive cleanup * Minor non-substantive cleanup * Minor non-substantive cleanup * DNF->NNF * DNF->NNF * Minor non-substantive cleanup * Minor non-substantive cleanup * Minor non-substantive cleanup * [docs] remove unfinished sentence * SO-3998: Add "additionalProperties" property to code systems * [docs] initial version of Extension Upgrade * [docs] minor non-substantive cleanup * [docs] corrected hyperlink * [docs] clarified SNOMED QL * [core] add sortBy() method to SearchResourceRequest to access sort param * [core] support ContextConfigurer in TerminologyRepositoryPlugins * [snomed] configure the Synonyms cache for each BranchContext * [commons] fix variable name in HashMapOptions * [core] support custom sort keys in SearchIndexResourceRequest Move custom termSort script sort to SnomedConceptSearchRequest. Add SnomedConceptSearchRequestBuilder.TERM_SORT to reference the script sort as a field sort. * [core] support sorting in generic ConceptSearchRequest * [index] bump Elasticsearch to the latest 7.6.2 release Release notes: https://www.elastic.co/guide/en/elasticsearch/reference/current/release-notes-7.6.0.html https://www.elastic.co/guide/en/elasticsearch/reference/current/release-notes-7.6.1.html https://www.elastic.co/guide/en/elasticsearch/reference/current/release-notes-7.6.2.html Breaking changes that affect Snow Owl: * Tokenizer `edgeNgram` has been renamed to `edge_ngram` (applied to analysis.json) * Sorting on `_id` field is deprecated and should be migrated before removed completely (reported as SO-4008) * [index] bump asm libraries to 7.2 * [build] use elasticsearch-oss:7.6.2 in docker-compose.yml * Add license scan report and status Signed-off-by: fossabot <[email protected]> * SO-4007: support additional predicate when checking for running jobs * SO-4007: rename RF2ReleaseType field `type` due to collision with... ...`Request.getType()` method. * SO-4007 #resolve Run effectiveTime restore process during RF2 Delta imports. * SO-4007: use parametersPredicate instead of jobPredicate in... ...ServiceProvider.isJobRunning() method * Update core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/ServiceProvider.java Co-Authored-By: András Péteri <[email protected]> * Update core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/ServiceProvider.java Co-Authored-By: András Péteri <[email protected]> * Update core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/ServiceProvider.java Co-Authored-By: András Péteri <[email protected]> * SO-3998: Add "locales" property to code systems * [core] fix registration of additional TerminologyComponent types in... ...TerminologyRegistry. * SO-3998: Update locale list on code system in SnomedRf2ImportRequest * SO-3965: Make parent lock context configurable * SO-3965: Make import parent lock context configurable * [core] fix incorrect path expression propagated to revision search... ...from BranchContext. `BranchContext.branchPath()` method has been replaced with a `path()` method to reflect that the value returned is a path, but might not be exactly the same as the current branch's path. Added relevant assertions to verify the behavior to BranchCompareRequestTest test case (using the `branch^` expression). * SO-3965: Let import lock context wrap subsequent lock operations * [core] remove duplicate ExportResult object Use Attachment instead. * SO-3965: Convert import request to generic lock request * SO-3965: Change visibility of LockRequest constructors * SO-3998: Add support for determining code system path from... ...the short name (and extensionOf attribute, if set) * [tests] add syserr calls to trace RF2 export test failures... ...on Travis and Github Actions * Update LockRequest.java * SO-3998: Fix extension working branch in API test constants * [export] trigger another build by adding more systrace * [tests] add assertions to verify that RF2 package does exist... ...before verifying its contents * [api] add degree-of-interest scoring to REST API * SO-4007: make sure we keep the released flag on its original value * SO-4007: add missing released flag set for refset members * SO-4007: organize builder() methods Convert primitive fields to object, so we can properly select them via `com.b2international.snowowl.core.request.IndexResourceRequest.fields`. * SO-4007 #resolve Set the released flag to its proper value during import so effective time restore functionality can run properly. * SO-3927 #resolve * SO-4007: fix NPE when getting refset without maptarget type * [core] lock branch for commit with the currently executing user... ...and not with the author of the commit. * [build] add log silencer to validation.snomed module * SO-4006: Update SNOMED CT auto RF2 export script (#536) Co-authored-by: András Péteri <[email protected]> * Fix typo * [core] support special search expressions in certain search option keys `@field(value)` style special search expression values can be used in selected option keys (currently in SNOMED CT Concept `term` filters only) to search content via the other options but using a single option key as source. Examples: `term=@ECL(<408739003)` used on the `GET /:path/concepts` API will return concepts that match the given ECL. `term=@Active(true)` used on the `GET /:path/concepts` API will return active concepts only. `term=@moduleId(900000000000207008)` used on the `GET /:path/concepts` API will return concepts with the specified module. * [releng] update changelog with 7.5.1 changes * [releng] release 7.5.1 * [releng] release 7.5.1 (update links) * [releng] prepare 7.6.0-SNAPSHOT * SO-3998: Use CodeSystem instead of CodeSystemEntry in requests * Add issue templates * [fossa] remove unused jetty-annotations This transitively removes javax.annotations-api as well and eliminates one of the reported OSS licensing issues. * [releng] remove unused dependencies from pom.xml * [fossa] upgrade ua-parser-js to latest 0.7.21 The new version is licensed under the MIT license without any GPL-2.0-only parts. * [releng] add bug_report template suggestions NOTE about exposing credentials. Some additional bullet points to the useful things to include section. * SO-4039: remove duplicate RandomSnomedIdentiferGenerator class * SO-4039: initial implementation of query labeler request * INFRA-42: Shrink size of Snow Owl OSS docker images - use prebuilt CentOS 7 image as a base. The image comes with daily package updates and AdoptOpenJDK11 pre-installed - use multistage build to get rid of install layers - use simple tar.gz artifact to extract and install Snow Owl - set explicit user and group ID - removed enforced ownership mutation in case of bind-mounts. It is now the responsibility of the user to setup necessary permissions for log, data and configuration dirs. https://snowowl.atlassian.net/browse/INFRA-42 * SO-3998: Implement "available upgrades" property expansion * SO-4039: add a TermStringConverter to strip off pipes from concept terms * SO-4039: fix remaining test failures * SO-4039: add javadoc to... ...SnomedQueryLabelerRequestBuilder.setDescriptionType * SO-4039: fix failed ETL parsing test cases * INFRA-40: Remove OSS docker image build for private registry https://snowowl.atlassian.net/browse/INFRA-40 * SO-3947: add commons-fileupload to snowowl.core.rest dependencies * SO-3947: remove java configured properties * SO-3947: add new fields to read by ApiConfig bootstrap * SO-3947: add class to store file upload configuration properties * SO-3947: configure MultipartResolver with the new registered properties * SO-4044 #resolve * SO-4045 #resolve Prevent duplicate language refset IDs when converting a list of ExtendedLocales to list of language refset ids. Bug: The value is present twice in the `Accept-Language` header as `en-x-<langRefSetId>` and as a replacement for an `en-gb` locale due to the setting in `snomed.languages` configuration key. * INFRA-30: Make product name and repo url configurable during docker ... ... build https://snowowl.atlassian.net/browse/INFRA-30 * INFRA-30: Rename version argument to 'tag' https://snowowl.atlassian.net/browse/INFRA-30 * INFRA-30: Move docker image build to separate Jenkins job https://snowowl.atlassian.net/browse/INFRA-30 * [dev] make sure we have proper GC settings in all launch configs * SO-3998: Implement "available upgrades" expansion in REST service * SO-3998: Remove STORAGE_KEY constant from CodeSystemEntry.Fields * SO-3998: Add support for "extensionOf" updates in CS update request * SO-3998: Add happy-path test case for "extensionOf" code system update * SO-3998: Update core-e2e-tests launch configuration format * [docs] update security realm guide and configurations Update File realm configuration. Update LDAP realm configuration. * Update docs/setup/security/index.md Co-Authored-By: András Péteri <[email protected]> * Update docs/setup/security/index.md Co-Authored-By: András Péteri <[email protected]> * Update docs/setup/security/index.md Co-Authored-By: András Péteri <[email protected]> * Update docs/setup/security/index.md Co-Authored-By: András Péteri <[email protected]> * Update docs/setup/security/index.md Co-Authored-By: András Péteri <[email protected]> * Update docs/setup/security/index.md Co-Authored-By: András Péteri <[email protected]> * Update docs/setup/security/ldap.md Co-Authored-By: András Péteri <[email protected]> * SO-3947 #resolve Final changes to upload file size configuration. Increase max allowed upload file size to `1gb`. Configure it through the `api.http.maxFileSize` and `api.http.maxRequestSize` configuration settings. * SO-3947: add NotEmpty annotations to HttpConfig fields * Update docs/setup/security/index.md Co-Authored-By: Gábor Nagy <[email protected]> * Update docs/setup/security/ldap.md Co-Authored-By: Gábor Nagy <[email protected]> * Update docs/setup/security/ldap.md Co-Authored-By: Gábor Nagy <[email protected]> * [docs] update ldap.md Authentication section * SO-4058: Support setting start/end effective times in RF2 export script * [core] fix spurious javadoc * SO-3998: Remove ResponseBody annotation from REST controller methods * SO-3998: Change repositoryUuid to repositoryId on CodeSystem * [snomed] make sure we return the version in descending effective time... ...order when calculating exportable versions. Also, make sure cut off base time calculation does not lead to occasional branch not found exceptions. * SO-3998: Change repositoryUuid to repositoryId on CodeSystemEntry... ...and CodeSystemCreateRequest * SO-3998: Add precondition check to CodeSystemRestService#searchByGet * SO-3998: Add missing since tag to CodeSystemConverter * SO-3998: Implement Serializable in CodeSystem * SO-3998: Revert import statement changes in SnomedRf2ExportRequest * SO-3998: Update request body parameters in core.rest.tests * SO-3998: Update request body parameters in snomed.core.rest.tests * [core] make pre-7.6.0 datasets compatible with 7.6.0 * [index] skip transient fields when creating index mapping Map types with `JsonValue` annotated, `String` return value methods as `keyword`s in the mapping. * SO-4039: support list of expressions in SnomedQueryLabelerRequest * [launch] fix launch configurations * [api] add missing Swagger Docs alternate type rules CodeSystemURI -> String ExtendedLocale -> String List<CodeSystemURI> -> List<String> List<ExtendedLocale> -> List<String> * [mrcm] Fix authorization issue with MRCM import/export * [ldap] Fetch users from a single LDAP group * [core] extract SNOMED CT specific additional properties to... ...SnomedTerminologyComponentConstants * [ldap] support custom user and role filters in LdapIdentityProvider Support `roleBaseDn` to fetch roles from a different baseDn node. Replace `rootDn` and `rootDnPassword` with `bindDn` and `bindDnPassword` configuration keys. * [core] add getNestedRequests implementation to TransactionalRequest Fixes authorization issue when performing commits/edits. * [core] add JsonIgnore to TransactionalRequest.getNestedRequests * [ldap] log LDAP naming/bind/search errors * [ldap] use {baseDn} template for the default `roleBaseDn` value * [docs] update LDAP guide with latest configuration changes * [ldap] log the configuration settings during boot * [migration] remove 6.x specific migration stuff from OSS 7.x product * [docs] add curator based snapshot/restore backup example * [releng] update changelog with 7.6.0 changes * [releng] release 7.6.0 * [CHR-1066] - snowowlFork to Artifactory (#2) * chr-1066 - add cache and test if javadoc in path * chr-1066 - print out some debug info * chr-1066 -fix copy/paste mistake * chr-1066 - print debug info * chr-1066 - print debug info * chr-1066 - yet another print debug info * chr-1066 - yet another print debug info * chr-1066 - extract var to control use of local artifacts * chr-1066 - extract var to control use of local artifacts * chr-1066 - extract var to control use of local artifacts * chr-1066 - print stuff * chr-1066 - change npm config, errors and skips next lines * chr-1066 - nes * chr-1066 - .. * chr-1066 - remove debug * chr-1066 - put env vars in docker and in the bash env * chr-1066 - put env vars in job as well, print debug * chr-1066 - yet another try to change path.. print debug * chr-1066 - yet another try to change path.. print debug * chr-1066 - I am doing stupid things now...fixing copy/paste error * chr-1066 - still not set...their documentation lies ... * chr-1066 - still not set completely... * chr-1066 - remove the debug echoed info Co-authored-by: Matteo Casu <[email protected]> * [CHR-1516] - dockerizing and adding languages and ES config * chr-1516 - customize snowowl.yml, Dockerfile, create Makefile, adjust circleCi config * chr-1516 - for testing make circleCi run on all branches but the master * chr-1516 - for testing change circleCi * chr-1516 - fix inentation * chr-1516 -install maven * chr-1516 - install maven... * chr-1516 - install maven again * chr-1516 - install maven again ??? * chr-1516 - use wrapper... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - use wrapper and fix error... * chr-1516 - .. * chr-1516 - split builds... why is file not found?!?! * chr-1516 - split builds... why is file not found?!?! * chr-1516 - push docker * chr-1516 - test if this will move the docs files where they have to be * chr-1516 - test build in circle ci * chr-1516 - test build in circle ci * chr-1516 - test build in circle ci * chr-1516 - test build in circle ci again * chr-1516 - test build in circle ci again2 * chr-1516 - print debug * chr-1516 - print other debug info, not so detailed * chr-1516 - print other debug info, not so detailed * chr-1516 - replace mvn plugin * chr-1516 - replace mvn plugin * chr-1516 - try stable node version * chr-1516 - try stable node version without sudo * chr-1516 - try stable node version without sudo * chr-1516 - try updating node stuff * chr-1516 - try updating node stuff more * chr-1516 - try updating docker image * chr-1516 - try updating make.. * chr-1516 - install npm * chr-1516 - install npm * chr-1516 - release libs on merge to master, release docker on tag * chr-1516 - release to dev on master merge, release to staging on tag * chr-1516 - code review changes * chr-1516 - fix staging deploy step * chr-1516 - fix staging deploy step * chr-1516 - fix staging deploy step * [CHR-1516] - add curl (#6) * chr-1516 - fix deployment - install curl + debug it * chr-1516 - fix release version * chr-1516 - get rid of unnecessary env var * chr-1516 - add langs again * chr-1516 - revert debug config * [CHR-1516]- revert deploy pom bit, change lang hierarchy (#9) * chr-1516- revert accidentally overridden pom bit * chr-1516- change lang config * chr-1516 - fix versioning (#10) * chr-1152 - expose metrics add custom plugin bit * test adding new plugin * renaming * renaming to extend * change plugin creation * add MonitoringRestService * add MonitoringRestService * fixes * change build.properties * rename rest * fix rest * change config spring * final adjustment * enable local * change baseUrl * [CHR-1152] - fix pom structure (#15) * chr-1152 - fix pom * chr-1152 - fix pom * chr-1152 - change the deployment - rename * update bbl (#26) * update dist (#27) * [CHR-1848] - fix overridden pom.... (#28) * fix overridden pom.... * add file to look out for in the md * Merge remote-tracking branch 'remotes/origin/7.x' into update # Conflicts: # CHANGELOG.md # Jenkinsfile # Makefile # README.md # SUMMARY.md # babylonhealth/.project # babylonhealth/com.babylonhealth.snowowl.rest.feature/.project # babylonhealth/com.babylonhealth.snowowl.rest.feature/feature.xml # babylonhealth/com.babylonhealth.snowowl.rest.feature/pom.xml # babylonhealth/com.babylonhealth.snowowl.rest/.project # babylonhealth/com.babylonhealth.snowowl.rest/META-INF/MANIFEST.MF # babylonhealth/com.babylonhealth.snowowl.rest/pom.xml # babylonhealth/com.babylonhealth.snowowl.rest/src/com/b2international/snowowl/core/rest/BblApiConfig.java # babylonhealth/pom.xml # cis/com.b2international.snowowl.snomed.cis.feature/feature.xml # cis/com.b2international.snowowl.snomed.cis.feature/pom.xml # cis/com.b2international.snowowl.snomed.cis.product/pom.xml # cis/com.b2international.snowowl.snomed.cis.product/snow-owl-cis.product # cis/com.b2international.snowowl.snomed.cis.rest/META-INF/MANIFEST.MF # cis/com.b2international.snowowl.snomed.cis.rest/pom.xml # cis/com.b2international.snowowl.snomed.cis/META-INF/MANIFEST.MF # cis/com.b2international.snowowl.snomed.cis/pom.xml # cis/pom.xml # commons/com.b2international.collections.api/META-INF/MANIFEST.MF # commons/com.b2international.collections.api/pom.xml # commons/com.b2international.collections.fastutil/META-INF/MANIFEST.MF # commons/com.b2international.collections.fastutil/pom.xml # commons/com.b2international.collections.jackson/META-INF/MANIFEST.MF # commons/com.b2international.collections.jackson/pom.xml # commons/com.b2international.commons.base/META-INF/MANIFEST.MF # commons/com.b2international.commons.base/pom.xml # commons/com.b2international.commons.test/META-INF/MANIFEST.MF # commons/com.b2international.commons.test/pom.xml # commons/com.b2international.commons/META-INF/MANIFEST.MF # commons/com.b2international.commons/pom.xml # commons/com.b2international.index.tests.tools/META-INF/MANIFEST.MF # commons/com.b2international.index.tests.tools/pom.xml # commons/com.b2international.index.tests/META-INF/MANIFEST.MF # commons/com.b2international.index.tests/pom.xml # commons/com.b2international.index/META-INF/MANIFEST.MF # commons/com.b2international.index/pom.xml # commons/com.b2international.mapdb/pom.xml # commons/com.b2international.scripting.api/.project # commons/com.b2international.scripting.groovy/.project # commons/com.b2international.scripting.groovy/build.properties # commons/pom.xml # core/com.b2international.snowowl.core.dependencies.feature/feature.xml # core/com.b2international.snowowl.core.dependencies.feature/pom.xml # core/com.b2international.snowowl.core.feature/feature.xml # core/com.b2international.snowowl.core.feature/pom.xml # core/com.b2international.snowowl.core.rest.feature/feature.xml # core/com.b2international.snowowl.core.rest.feature/pom.xml # core/com.b2international.snowowl.core.rest.tests/.launch/core-e2e-tests.launch # core/com.b2international.snowowl.core.rest.tests/META-INF/MANIFEST.MF # core/com.b2international.snowowl.core.rest.tests/pom.xml # core/com.b2international.snowowl.core.rest/META-INF/MANIFEST.MF # core/com.b2international.snowowl.core.rest/pom.xml # core/com.b2international.snowowl.core.rest/snow-owl-api-docs/package-lock.json # core/com.b2international.snowowl.core.rest/snow-owl-api-docs/package.json # core/com.b2international.snowowl.core.rest/src/com/b2international/snowowl/core/rest/ControllerExceptionMapper.java # core/com.b2international.snowowl.core.rest/src/com/b2international/snowowl/core/rest/SnowOwlApiConfig.java # core/com.b2international.snowowl.core.rest/src/com/b2international/snowowl/core/rest/codesystem/CodeSystemRestSearch.java # core/com.b2international.snowowl.core.rest/src/com/b2international/snowowl/core/rest/codesystem/CodeSystemRestService.java # core/com.b2international.snowowl.core.rest/src/com/b2international/snowowl/core/rest/codesystem/CodeSystemService.java # core/com.b2international.snowowl.core.tests/.launch/core-unit-tests.launch # core/com.b2international.snowowl.core.tests/META-INF/MANIFEST.MF # core/com.b2international.snowowl.core.tests/pom.xml # core/com.b2international.snowowl.core/META-INF/MANIFEST.MF # core/com.b2international.snowowl.core/pom.xml # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/attachments/Attachment.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystem.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemCreateRequest.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemCreateRequestBuilder.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemEntry.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemGetRequestBuilder.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemRequests.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemSearchRequest.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemUpdateRequest.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystemUpdateRequestBuilder.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/CodeSystems.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/codesystem/version/CodeSystemVersionCreateRequest.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/console/CodeSystemsCommand.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/domain/BranchContextProvider.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/domain/ExportResult.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/repository/RepositoryCodeSystemProvider.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/repository/TerminologyRepositoryInitializer.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/repository/TerminologyRepositoryPlugin.java # core/com.b2international.snowowl.core/src/com/b2international/snowowl/core/request/CodeSystemResourceRequest.java # core/com.b2international.snowowl.datastore.server.tests/.classpath # core/com.b2international.snowowl.datastore.server.tests/.project # core/com.b2international.snowowl.datastore.server.tests/build.properties # core/com.b2international.snowowl.datastore/.project # core/com.b2international.snowowl.identity.ldap/META-INF/MANIFEST.MF # core/com.b2international.snowowl.identity.ldap/pom.xml # core/com.b2international.snowowl.identity.ldap/src/com/b2international/snowowl/identity/ldap/LdapIdentityPlugin.java # core/com.b2international.snowowl.identity.ldap/src/com/b2international/snowowl/identity/ldap/LdapIdentityProvider.java # core/com.b2international.snowowl.identity.ldap/src/com/b2international/snowowl/identity/ldap/LdapIdentityProviderConfig.java # core/com.b2international.snowowl.logback.config/META-INF/MANIFEST.MF # core/com.b2international.snowowl.logback.config/pom.xml # core/com.b2international.snowowl.server.product.feature/feature.xml # core/com.b2international.snowowl.server.product.feature/pom.xml # core/com.b2international.snowowl.server.product/META-INF/MANIFEST.MF # core/com.b2international.snowowl.server.product/pom.xml # core/pom.xml # dist/pom.xml # docker/Dockerfile # docker/config/snowowl.yml # docs/backup/index.md # fhir/com.b2international.snowowl.fhir.core/META-INF/MANIFEST.MF # fhir/com.b2international.snowowl.fhir.core/pom.xml # fhir/com.b2international.snowowl.fhir.core/src/com/b2international/snowowl/fhir/core/provider/CodeSystemApiProvider.java # fhir/com.b2international.snowowl.fhir.core/src/com/b2international/snowowl/fhir/core/provider/FhirCodeSystemApiProvider.java # fhir/com.b2international.snowowl.fhir.rest.feature/feature.xml # fhir/com.b2international.snowowl.fhir.rest.feature/pom.xml # fhir/com.b2international.snowowl.fhir.rest.tests/.launch/fhir-api-tests.launch # fhir/com.b2international.snowowl.fhir.rest.tests/META-INF/MANIFEST.MF # fhir/com.b2international.snowowl.fhir.rest.tests/pom.xml # fhir/com.b2international.snowowl.fhir.rest/META-INF/MANIFEST.MF # fhir/com.b2international.snowowl.fhir.rest/pom.xml # fhir/pom.xml # net4j/com.b2international.snowowl.eventbus.tests/META-INF/MANIFEST.MF # net4j/com.b2international.snowowl.eventbus.tests/pom.xml # net4j/com.b2international.snowowl.eventbus/META-INF/MANIFEST.MF # net4j/com.b2international.snowowl.eventbus/pom.xml # net4j/com.b2international.snowowl.rpc.test/META-INF/MANIFEST.MF # net4j/com.b2international.snowowl.rpc.test/pom.xml # net4j/com.b2international.snowowl.rpc/META-INF/MANIFEST.MF # net4j/com.b2international.snowowl.rpc/pom.xml # net4j/pom.xml # pom.xml # releng/com.b2international.snowowl.server.update/.launch/snow-owl-oss.launch # releng/com.b2international.snowowl.server.update/assembly/common/configuration/snowowl.yml # releng/com.b2international.snowowl.server.update/assembly/common/scripts/snowowl_export.sh # releng/com.b2international.snowowl.server.update/category.xml # releng/com.b2international.snowowl.server.update/pom.xml # releng/com.b2international.snowowl.server.update/snow-owl-oss.product # releng/pom.xml # releng/target-platform/pom.xml # snomed/com.b2international.snowowl.snomed.common/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.common/pom.xml # snomed/com.b2international.snowowl.snomed.common/src/com/b2international/snowowl/snomed/common/SnomedTerminologyComponentConstants.java # snomed/com.b2international.snowowl.snomed.core.feature/feature.xml # snomed/com.b2international.snowowl.snomed.core.feature/pom.xml # snomed/com.b2international.snowowl.snomed.core.rest.feature/feature.xml # snomed/com.b2international.snowowl.snomed.core.rest.feature/pom.xml # snomed/com.b2international.snowowl.snomed.core.rest.tests/.launch/snomed-e2e-tests.launch # snomed/com.b2international.snowowl.snomed.core.rest.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.core.rest.tests/pom.xml # snomed/com.b2international.snowowl.snomed.core.rest.tests/src/com/b2international/snowowl/snomed/core/rest/SnomedApiTestConstants.java # snomed/com.b2international.snowowl.snomed.core.rest.tests/src/com/b2international/snowowl/snomed/core/rest/io/SnomedExportApiTest.java # snomed/com.b2international.snowowl.snomed.core.rest/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.core.rest/pom.xml # snomed/com.b2international.snowowl.snomed.core.rest/src/com/b2international/snowowl/snomed/core/rest/SnomedExportRestService.java # snomed/com.b2international.snowowl.snomed.core.rest/src/com/b2international/snowowl/snomed/core/rest/SnomedRf2ExportRestService.java # snomed/com.b2international.snowowl.snomed.core.rest/src/com/b2international/snowowl/snomed/core/rest/domain/SnomedIdentifierResponse.java # snomed/com.b2international.snowowl.snomed.datastore.tests/.launch/snomed-core-unit-tests.launch # snomed/com.b2international.snowowl.snomed.datastore.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.datastore.tests/pom.xml # snomed/com.b2international.snowowl.snomed.datastore.tests/src/com/b2international/snowowl/snomed/datastore/index/entry/SnomedRelationshipIndexEntrySerializationTest.java # snomed/com.b2international.snowowl.snomed.datastore/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.datastore/pom.xml # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/core/ql/Expressions.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/index/change/ComponentEffectiveTimeRestoreChangeProcessor.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/index/change/SnomedRepositoryPreCommitHook.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/internal/SnomedRepositoryInitializer.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/request/rf2/SnomedRf2ExportRequest.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/request/rf2/SnomedRf2ExportRequestBuilder.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/request/rf2/SnomedRf2ImportRequest.java # snomed/com.b2international.snowowl.snomed.datastore/src/com/b2international/snowowl/snomed/datastore/request/rf2/importer/Rf2EffectiveTimeSlice.java # snomed/com.b2international.snowowl.snomed.dsl/src/com/b2international/snowowl/snomed/dsl/query/queryast/AttributeClauseGroup.java # snomed/com.b2international.snowowl.snomed.dsl/src/com/b2international/snowowl/snomed/dsl/query/queryast/NotClause.java # snomed/com.b2international.snowowl.snomed.ecl.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.ecl.tests/pom.xml # snomed/com.b2international.snowowl.snomed.ecl/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.ecl/pom.xml # snomed/com.b2international.snowowl.snomed.etl.tests/.project # snomed/com.b2international.snowowl.snomed.etl.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.etl.tests/pom.xml # snomed/com.b2international.snowowl.snomed.etl.tests/src/com/b2international/snowowl/snomed/etl/tests/EtlParsingTest.xtend # snomed/com.b2international.snowowl.snomed.etl/.classpath # snomed/com.b2international.snowowl.snomed.etl/.project # snomed/com.b2international.snowowl.snomed.etl/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.etl/pom.xml # snomed/com.b2international.snowowl.snomed.etl/src-gen/com/b2international/snowowl/snomed/etl/etl/ConceptIdReplacementSlot.java # snomed/com.b2international.snowowl.snomed.etl/src-gen/com/b2international/snowowl/snomed/etl/etl/ExpressionReplacementSlot.java # snomed/com.b2international.snowowl.snomed.etl/src-gen/com/b2international/snowowl/snomed/etl/validation/AbstractEtlValidator.java # snomed/com.b2international.snowowl.snomed.etl/src/com/b2international/snowowl/snomed/etl/EtlStandaloneSetup.java # snomed/com.b2international.snowowl.snomed.etl/src/com/b2international/snowowl/snomed/etl/scoping/EtlScopeProvider.java # snomed/com.b2international.snowowl.snomed.fhir/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.fhir/pom.xml # snomed/com.b2international.snowowl.snomed.fhir/src/com/b2international/snowowl/snomed/fhir/SnomedCodeSystemApiProvider.java # snomed/com.b2international.snowowl.snomed.fhir/src/com/b2international/snowowl/snomed/fhir/SnomedConceptMapApiProvider.java # snomed/com.b2international.snowowl.snomed.icons/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.icons/pom.xml # snomed/com.b2international.snowowl.snomed.ql.tests/.project # snomed/com.b2international.snowowl.snomed.ql.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.ql.tests/pom.xml # snomed/com.b2international.snowowl.snomed.ql/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.ql/pom.xml # snomed/com.b2international.snowowl.snomed.reasoner.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.reasoner.tests/pom.xml # snomed/com.b2international.snowowl.snomed.reasoner/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.reasoner/pom.xml # snomed/com.b2international.snowowl.snomed.scg.tests/.project # snomed/com.b2international.snowowl.snomed.scg.tests/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.scg.tests/pom.xml # snomed/com.b2international.snowowl.snomed.scg/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.snomed.scg/pom.xml # snomed/com.b2international.snowowl.snomed.scg/src-gen/com/b2international/snowowl/dsl/validation/AbstractSCGJavaValidator.java # snomed/com.b2international.snowowl.snomed.scg/src-gen/com/b2international/snowowl/snomed/scg/validation/AbstractScgValidator.java # snomed/com.b2international.snowowl.snomed.scg/src/com/b2international/snowowl/dsl/ParseException.java # snomed/com.b2international.snowowl.snomed.scg/src/com/b2international/snowowl/snomed/scg/ScgStandaloneSetup.java # snomed/com.b2international.snowowl.snomed.semanticengine.simpleast.test/.classpath # snomed/com.b2international.snowowl.validation.snomed/.launch/validation-snomed-tests.launch # snomed/com.b2international.snowowl.validation.snomed/META-INF/MANIFEST.MF # snomed/com.b2international.snowowl.validation.snomed/pom.xml # snomed/pom.xml # tests/com.b2international.restassured-all/pom.xml # tests/com.b2international.snowowl.test.commons/META-INF/MANIFEST.MF # tests/com.b2international.snowowl.test.commons/pom.xml # tests/com.b2international.snowowl.test.commons/src/com/b2international/snowowl/test/commons/SnomedContentRule.java # tests/com.b2international.snowowl.test.dependencies/META-INF/MANIFEST.MF # tests/com.b2international.snowowl.test.dependencies/pom.xml # tests/com.b2international.snowowl.test.feature/feature.xml # tests/com.b2international.snowowl.test.feature/pom.xml # tests/pom.xml * fix errored files on merge.......... * fix errored files on merge..... * remove unnecessary files * remove unnecessary files and update the md file * fix error by merge... * fix error by merge... * just for test, to revert!!! * fix config - change env var in circle ci as well * fix config - change env var in circle ci as well, again * facepalm * revert test config Co-authored-by: Mark Czotter <[email protected]> Co-authored-by: András Péteri <[email protected]> Co-authored-by: aalaswadi <[email protected]> Co-authored-by: Gábor Nagy <[email protected]> Co-authored-by: Balazs Banfai <[email protected]> Co-authored-by: Brandon Ulrich <[email protected]> Co-authored-by: fossabot <[email protected]> Co-authored-by: Kovacs Tamas <[email protected]> Co-authored-by: Matteo Casu <[email protected]>
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